Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_C24
(479 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687... 30 1.1
06_03_0508 - 21607706-21608863,21608943-21609090,21609411-216095... 30 1.1
07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936 29 1.5
04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204 28 3.4
04_03_0010 - 9318031-9318275,9318364-9319123,9319528-9319845,931... 28 3.4
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59... 28 4.5
06_01_0855 + 6493239-6494420 27 6.0
05_02_0035 - 5872635-5873538,5873679-5873839,5873958-5874077,587... 27 6.0
02_05_1141 - 34388867-34388950,34389139-34389189,34389273-343893... 27 6.0
01_06_0655 - 30916396-30916578,30916689-30916748,30916916-309170... 27 6.0
11_02_0052 + 7788655-7789850,7789921-7790011 27 7.9
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 27 7.9
>09_06_0252 +
21867179-21867283,21868362-21868526,21868621-21868730,
21868802-21868904,21868998-21869110,21869204-21869357,
21869476-21870633
Length = 635
Score = 29.9 bits (64), Expect = 1.1
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = +1
Query: 202 KNEIKSLKEQCIDTCNV---INNIPQVASTSNEDEAAERSLSYVEGVKTEIQNANAIILK 372
+ E K LKE+ D V ++N+P V S +D+ Y GVK + + +
Sbjct: 109 EKEAKELKEKIEDEYRVNMILDNLPLVVSVLRQDKNIAYQGGYHVGVKGQYTGSK----E 164
Query: 373 DEHLLTSHFFYDVKEKNDQIEELT 444
+++ + +H + VK D EL+
Sbjct: 165 EKYFIHNHLSFLVKYHKDDDSELS 188
>06_03_0508 -
21607706-21608863,21608943-21609090,21609411-21609523,
21609612-21609705,21609841-21609950,21610093-21610257,
21611660-21611800
Length = 642
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -3
Query: 459 AASKCRQLFYLVVFFLYIIEEMASK*MLILQYNGICILNFSFHTLDIRKGSFGCFIFIR 283
A S LF +F+ + E+ IL + + I++++F L G + CF F+R
Sbjct: 575 AGSSALYLFAYAIFYFFNKLEITKLVSGILYFGYMLIISYAFFVLTGTIGFYACFWFVR 633
>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
Length = 838
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 242 VSMHCSLRDFISFFRTSWVSVLGSFDVMLI 153
+SM CS++ FI FF W+ ++ +F L+
Sbjct: 437 LSMMCSMKAFIFFFFAIWIVIMAAFVFWLL 466
>04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204
Length = 546
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 169 NEPNTETQEVLKNEIKSLKEQCIDTCNVINNIPQVASTSNEDEAAER 309
N P T + +LK EI LKE+ ++ + P AS + ++ +E+
Sbjct: 390 NRPETNEERILKEEINLLKEKLKESEANKTDGPDQASPEDPEDLSEK 436
>04_03_0010 -
9318031-9318275,9318364-9319123,9319528-9319845,
9319921-9320229,9320594-9321013
Length = 683
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 100 DITFIKYL*TVEKGRRRAINMTSNEPNTETQEVLKNEIKSLKEQCIDTCNVINNIPQVAS 279
DI+ +Y T K +R T N P + + + +K+++ C++ N I AS
Sbjct: 297 DISLHRYT-TNNKSVKRGCITTENSPLKKVKNPMVKVMKNIQSTLDTNCSIANKIGMYAS 355
Query: 280 TSNEDE 297
+EDE
Sbjct: 356 -DDEDE 360
>04_01_0058 +
592846-593185,594641-595182,596298-596987,597078-597233,
597277-597856,598601-598764,598907-599100,599702-599750,
599777-599806
Length = 914
Score = 27.9 bits (59), Expect = 4.5
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
Frame = +1
Query: 154 INMTSNEPNTETQEVLKNEIKSLKEQCIDTCN--VINNIPQVASTSNEDEAAERSLSYVE 327
+N+T E N + V N+ KS + +D C+ ++N + ++ + E + + V
Sbjct: 433 LNLTETEVNLDDNVVANNDTKSSGDINVDVCSNTGVSNRSSDTEPTKKETSGENTSNIVN 492
Query: 328 GVKTEIQNANAIILKDEHLLTSHFFYDVKEKNDQIEELTAFTRGLV-HD 471
V A I K E L E + + L AF GLV HD
Sbjct: 493 DVLKYAFEAVGHIPKIEGL------GSFTEAGNPVMALVAFLSGLVDHD 535
>06_01_0855 + 6493239-6494420
Length = 393
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 191 WVSVLGSFDVMLIARRRPFSTVHRYLMKVISQFTVLQNEC 72
W+ ++GSFD +L A R S + L KV+ L +C
Sbjct: 158 WLQIVGSFDKILKALRMNSSLLGSDLEKVVKPNLELLKQC 197
>05_02_0035 -
5872635-5873538,5873679-5873839,5873958-5874077,
5874202-5874330
Length = 437
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 357 ICILNFSFHTLDIRKGSFGCFI 292
+C N S TLD+ GCFI
Sbjct: 406 VCFANMSLETLDVALHRLGCFI 427
>02_05_1141 -
34388867-34388950,34389139-34389189,34389273-34389384,
34390302-34390489
Length = 144
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 193 EVLKNEIKSLKEQCIDTCNVINNIPQ 270
EVLK +I+ +K+QC C V +N+ Q
Sbjct: 120 EVLKRQIQIMKQQC--NCTVTSNLTQ 143
>01_06_0655 -
30916396-30916578,30916689-30916748,30916916-30917032,
30917139-30917246,30917301-30917390,30917731-30917799,
30918086-30918178,30918292-30918384,30918540-30918621,
30919467-30919534,30919662-30920684
Length = 661
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 193 EVLKNEIKSLKEQCIDTCNVINNIPQVASTSNEDEAAERSLSYVEGV 333
+V++NE++ C N I + A+ N + AER+ + EG+
Sbjct: 546 KVVENEVRGTAISCSPLHNAIRALKTAATKVNGERKAERAFTNREGL 592
>11_02_0052 + 7788655-7789850,7789921-7790011
Length = 428
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 191 WVSVLGSFDVMLIARRRPFSTVHRYLMKVISQFTVLQNEC 72
WV LGSFD++L RR + + + +V+ L EC
Sbjct: 156 WVPFLGSFDMLLKILRRCNAILATDVDRVVRPNVALLGEC 195
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/86 (22%), Positives = 41/86 (47%)
Frame = +1
Query: 82 CKTVNCDITFIKYL*TVEKGRRRAINMTSNEPNTETQEVLKNEIKSLKEQCIDTCNVINN 261
C T NC+ + +EKG I + ++ +++ ++S +C+ V+
Sbjct: 471 CCTPNCESEALAVAAAMEKGTTHPIGRAVLD-HSVGKDLPLVAVESF--ECLPGRGVVAT 527
Query: 262 IPQVASTSNEDEAAERSLSYVEGVKT 339
+ V + +NEDE ++ S+ VE + +
Sbjct: 528 LSGVKAGNNEDELSKASIGSVEYISS 553
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,427,856
Number of Sequences: 37544
Number of extensions: 206564
Number of successful extensions: 463
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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