Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C23
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    27   1.1  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    27   1.1  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    27   1.1  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    27   1.1  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   3.4  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    26   3.4  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   7.8  

>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 373 LSIKYCKINYRFTRTVKKYLTNKDI 447
           L + YC + +  TRTV KYL  K I
Sbjct: 181 LFVIYCALGFGITRTVPKYLMIKGI 205


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 373 LSIKYCKINYRFTRTVKKYLTNKDI 447
           L + YC + +  TRTV KYL  K I
Sbjct: 181 LFVIYCALGFGITRTVPKYLMIKGI 205


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 373 LSIKYCKINYRFTRTVKKYLTNKDI 447
           L + YC + +  TRTV KYL  K I
Sbjct: 153 LFVIYCALGFGITRTVPKYLMIKGI 177


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 373 LSIKYCKINYRFTRTVKKYLTNKDI 447
           L + YC + +  TRTV KYL  K I
Sbjct: 181 LFVIYCALGFGITRTVPKYLMIKGI 205


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 119 LKSNVETINNQMLYGTMSGCLCV 187
           LK+N+ T+N   ++G   G +CV
Sbjct: 328 LKTNISTLNTGKIWGYTIGTICV 350


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 291 VILIKLKVPYIIFFLLRKLIVIKNSENSEHQ 383
           V+ I L +P +I FL+R+   + NS+ S  +
Sbjct: 18  VLYIVLLLPVLIHFLIRRKTQLSNSDKSSEK 48


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 300 IKLKVPYIIFFLLRKLIVIKNSENSE--HQILQNKL 401
           I +  PY   F++  L  I +SEN+E  HQ L+N L
Sbjct: 598 IHINAPYWDPFMITDLKFIGSSENAELIHQRLRNGL 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,604,830
Number of Sequences: 5004
Number of extensions: 25796
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)