Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C23
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0133 + 12176059-12176238,12177244-12177362,12177515-121776...    27   5.8  

>06_02_0133 +
           12176059-12176238,12177244-12177362,12177515-12177612,
           12177811-12177870,12177920-12177990,12178082-12178276,
           12178395-12178441,12178532-12178598,12178660-12178665,
           12178689-12178789,12179014-12179115,12179182-12179323,
           12179578-12179661,12179760-12180080
          Length = 530

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 394 FCNI*CSEFSEFLITISFRSKKKIIYGTLSFIRITWI 284
           FC I  S ++   +T S R   + I+ TLSFI  T+I
Sbjct: 293 FCGIVMSHYAWHNVTESSRITTRHIFATLSFIAETFI 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,787,226
Number of Sequences: 37544
Number of extensions: 121846
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)