Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C23
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10438-8|AAU87835.1|  627|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z22176-2|CAD91716.2|  650|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical...    27   9.1  

>U10438-8|AAU87835.1|  627|Caenorhabditis elegans Hypothetical
           protein B0280.2 protein.
          Length = 627

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 312 VPYIIFFLLRKLIVIKNSENSEHQILQNKLQIYAY 416
           +P+I   + RK+I++KN +N   ++L  +L++  Y
Sbjct: 348 LPHIDERMTRKMILMKNHQNLREEVLPFELEVGNY 382


>Z22176-2|CAD91716.2|  650|Caenorhabditis elegans Hypothetical
           protein ZK1098.2 protein.
          Length = 650

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 334 YYEN*SLSRIQKILSIKYCKINYRFTRTVKKY 429
           Y++N +L  +    S K C+ ++R T TV+K+
Sbjct: 286 YFDNCNLFTVCLSFSSKMCRKSFRSTETVEKF 317


>AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical
           protein F40G9.1 protein.
          Length = 636

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 328 FFYYEN*SLSRIQKILSIKYCKINYRFTRTV--KKYLT 435
           FF+ +N    R + IL IK CKI + FT+ V  K+ LT
Sbjct: 324 FFFIQN---LRKKMILHIKMCKILHYFTKNVEAKRLLT 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,826,391
Number of Sequences: 27780
Number of extensions: 141697
Number of successful extensions: 319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)