Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C23
         (473 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   2.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   2.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   8.9  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 317 VYYFFFTTKTN 349
           VYY+FFT +T+
Sbjct: 474 VYYYFFTQRTS 484


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 317 VYYFFFTTKTN 349
           VYY+FFT +T+
Sbjct: 474 VYYYFFTQRTS 484


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 406 ICNLFCNI*CSEFSEFLITISFRSKKKII 320
           I  +FC   CSE  E L+   FR   K+I
Sbjct: 14  ISAVFCVGLCSEDEERLVRDLFRGYNKLI 42


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 384 ILQNKLQIYAYG 419
           +L NKL +Y YG
Sbjct: 499 VLSNKLAMYLYG 510


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 345 LIVIKNSENSEHQILQN 395
           LIV +NS+ S H++  N
Sbjct: 214 LIVYQNSDESFHRLTSN 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,518
Number of Sequences: 438
Number of extensions: 1937
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)