Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_C21
(358 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 39 2e-04
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 32 0.023
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 29 0.16
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 29 0.21
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.28
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 28 0.49
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 1.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 2.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 2.6
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 2.6
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 3.5
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 25 3.5
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 3.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 4.6
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 25 4.6
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 25 4.6
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 24 6.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 24 6.1
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 24 8.0
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 24 8.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 24 8.0
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 24 8.0
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 24 8.0
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 24 8.0
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 39.1 bits (87), Expect = 2e-04
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +2
Query: 11 EMNGRIVGTKPLYVALAQRKEDRKAHL 91
EMN R++ KPLYVALAQRKE R++ L
Sbjct: 423 EMNQRMLAGKPLYVALAQRKEVRRSQL 449
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 11 EMNGRIVGTKPLYVALAQRKEDRKAHL 91
E+N + K LYV AQ+K +R+ L
Sbjct: 320 ELNDKEYKGKKLYVGRAQKKHEREEEL 346
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 32.3 bits (70), Expect = 0.023
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +2
Query: 149 FQPSSAGGYFVPTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQPPYR 328
+ PSS G P P+ Y P P PT + P PS + +Y+ P Y
Sbjct: 1558 YSPSSPGYSTSPAYMPSSPSYSPTS-PSYSPTS--PSYSPTSPSYSPTSPSYSATSPSYS 1614
Query: 329 P--PTRAPT 349
P P+ +PT
Sbjct: 1615 PTSPSYSPT 1623
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 29.5 bits (63), Expect = 0.16
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 14 MNGRIVGTKPLYVALAQRKEDRKAHLT 94
+NG + G K L+V A+++EDRK L+
Sbjct: 482 LNGVLFGKKRLFVNYAEKREDRKKRLS 508
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 29.1 bits (62), Expect = 0.21
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 14 MNGRIVGTKPLYVALAQRKEDR 79
+NG +VG K ++V A+RK DR
Sbjct: 445 LNGMMVGKKRIFVCFAERKSDR 466
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 0.28
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 215 PAQMPQIRPTPRWTAQ-PPVRPSTQTPASAYANMQ-PPYRPPTRAP 346
PA I P P+ A PPV P ++ P ++ PP PP+ AP
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217
Score = 25.8 bits (54), Expect = 2.0
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = +2
Query: 179 VPTIPPAQRFYGPAQMPQIR--PTPRWTAQPPVRPSTQTPASAYANMQPPYRPP 334
VP +P P +P P P + PPV T TP ++ P PP
Sbjct: 1011 VPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPP 1064
Score = 25.4 bits (53), Expect = 2.6
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Frame = +2
Query: 155 PSSAGGYFVPTIPP---AQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQPPY 325
P A +P+IP A P+ +P + P P A P +PS P + PP
Sbjct: 1065 PVPAPSSEIPSIPAPSGAPPVPAPSGIPPV-PKPSVAAPPVPKPSVAVPPVPAPSGAPPV 1123
Query: 326 -RPPTRAP 346
+P AP
Sbjct: 1124 PKPSVAAP 1131
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 27.9 bits (59), Expect = 0.49
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 197 QEVWWEQSILLHYLVGISDPFVAYAYLPCVACTVKSNGLC 78
+E+W+E L H LVG C CT+ S GLC
Sbjct: 192 KELWFE---LNHTLVGFGQTICLPRGRRCDMCTLSSKGLC 228
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 1.5
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 202 TLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSNKSSNT 351
T + +++NA N+T+ +T T +N+ T LP+S+KS T
Sbjct: 222 TCIVNASNATNSTFWLNGTNSTNGTNSTNSTSTTSHSLTKLPTSSKSLTT 271
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 2.6
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 263 PPVRPSTQTPASAYANMQPPYRPPTRAP 346
PPVRP + P A PP PP P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPP--PPMSVP 1715
Score = 24.6 bits (51), Expect = 4.6
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +2
Query: 179 VPTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQPPYRPPTRAPT 349
V T P + P QM P P + PP + PA + PP P + AP+
Sbjct: 1687 VSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP-PSAPPPPLPASSAPS 1742
Score = 23.8 bits (49), Expect = 8.0
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Frame = +2
Query: 215 PAQMPQIRPTPRWTAQPPVRPST------QTPASAYANMQPPYRPPTRA 343
P Q P + + +PPVRP+ Q P S+ + PP P A
Sbjct: 1339 PQQAPLENQFSKMSLEPPVRPAVPTSPKPQIPDSSNVHAPPPPVQPMNA 1387
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 2.6
Identities = 23/69 (33%), Positives = 27/69 (39%)
Frame = +2
Query: 152 QPSSAGGYFVPTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQPPYRP 331
Q SA G PT+ P M + P P + P+T P S Y N PP P
Sbjct: 146 QEPSASGVNAPTVS------APNSM--VSPPPSFQPPSAAAPATSLP-SDY-NPPPPPPP 195
Query: 332 PTRAPTQAA 358
P QAA
Sbjct: 196 PPAVEDQAA 204
Score = 24.2 bits (50), Expect = 6.1
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2
Query: 257 AQPPVRPSTQTPASAYANMQPPYRPPTRAPTQA 355
A P P T TP A PP PP P Q+
Sbjct: 218 AVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQS 250
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 2.6
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Frame = +2
Query: 152 QPSSAGGYFVPTIPPAQRFYG---PAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQPP 322
QP+ A P + P + Y P + + PP PS Q S + + PP
Sbjct: 419 QPNYANLTPTPQVSPKRPTYSRSSPLPSASVPALGDGSPDPPAAPSIQNSLSVHESEMPP 478
Query: 323 YRPPTRAPTQAA 358
+ TR TQ A
Sbjct: 479 H--VTRDYTQPA 488
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 25.0 bits (52), Expect = 3.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 214 SSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSNKSSNT 351
S T + + +P+ +T T T G +Y TT+P+ +S T
Sbjct: 71 SITTSTQSHSSPVIVVSTVGTVTETTISGSTEYTTTIPAEGITSGT 116
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 3.5
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 227 PQIRPTPRWTAQ-PPVRPSTQTPASAYANMQPP 322
P+I+ P + Q PP +P + PA+A ++ PP
Sbjct: 343 PKIQRLPPSSIQIPPPKPMQKFPANAASSESPP 375
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 25.0 bits (52), Expect = 3.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 214 SSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSNKSSNT 351
S T + + +P+ +T T T G +Y TT+P+ +S T
Sbjct: 71 SITTSTQSHSSPVIVVSTVGTVTETTISGSTEYTTTIPAEGITSGT 116
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 4.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 190 TSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYAT 318
TS T++ +STN +TT+T T+ T S+T +A+
Sbjct: 634 TSSTSIPLTSTNRTSTTFT---SSTSISTSSSSTATSSTSFAS 673
Score = 24.2 bits (50), Expect = 6.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 190 TSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATT 321
TS + SST +T T +C T+ +++T + ATT
Sbjct: 510 TSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATT 553
Score = 24.2 bits (50), Expect = 6.1
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 190 TSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSNKSSNT 351
TS + SST +T T +C T+ +++T I T P+S SS+T
Sbjct: 569 TSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPI-------TSPNSTSSSST 615
Score = 23.8 bits (49), Expect = 8.0
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 190 TSCTTLLW-SSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSNKS 342
TSCTT T +++ TP+ PT T S+T I + +T+ +N S
Sbjct: 170 TSCTTSTSIPPTGGSSSLSTPIT-PTVPPTSTSSTSIPIPPTSTSSTDTNSS 220
Score = 23.8 bits (49), Expect = 8.0
Identities = 12/57 (21%), Positives = 27/57 (47%)
Frame = +1
Query: 151 PTK*CRRILCSHHTSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATT 321
PT + ++ T+ T++ ++ST +T +C T+ +++T + TT
Sbjct: 415 PTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTT 471
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 24.6 bits (51), Expect = 4.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 176 SILLHYLVGISDPFVAYAYLPCVACTVKSNG 84
S+L Y+V ++ VA +P V VKSNG
Sbjct: 770 SLLEDYVVYLTSKTVAPENVPAVISIVKSNG 800
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 24.6 bits (51), Expect = 4.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 276 QALKHLHRLTQICNHPTVL 332
Q LK + L +ICNHP +L
Sbjct: 557 QPLKAIGLLKKICNHPDLL 575
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 24.2 bits (50), Expect = 6.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 221 VLDHKSVVQEVWWEQSILLH 162
VLDH + + W+QS+ LH
Sbjct: 541 VLDHGKICEYANWKQSLELH 560
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 24.2 bits (50), Expect = 6.1
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +2
Query: 155 PSSAGGYFVPTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRP-STQTPASAYA---NMQPP 322
PS+ P PP R P M P T++PP+ P S++ A+A A PP
Sbjct: 259 PSNGTVSSPPNSPP--RPIAPVSM---NPAINSTSKPPLPPPSSRVSAAALAANKKRPPP 313
Query: 323 YRPPTR 340
PP+R
Sbjct: 314 PPPPSR 319
Score = 24.2 bits (50), Expect = 6.1
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +2
Query: 167 GGYFVPTIPPAQRFYGP--AQMPQIRPTPRWTAQPPVRPSTQTPASAYANM 313
G P +PP+ P A MP P P PP P+ PA+ A++
Sbjct: 442 GAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPA-PAPAAPVASI 491
Score = 23.8 bits (49), Expect = 8.0
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +2
Query: 161 SAGGYFVPTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQP-PYRPPT 337
SAG + PP ++ P+ P+ A PP+ P + S+ N P P P +
Sbjct: 220 SAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVS 279
Query: 338 RAP 346
P
Sbjct: 280 MNP 282
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 23.8 bits (49), Expect = 8.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 263 PPVRPSTQTPASAYANMQPPYRPPTRAPT 349
PP+R S++ P+S ++ P P R P+
Sbjct: 455 PPMRLSSEPPSSNGFSIAHPNNSPLRPPS 483
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 23.8 bits (49), Expect = 8.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 263 PPVRPSTQTPASAYANMQPPYRP 331
PP+ P AS + QPPY P
Sbjct: 149 PPIPPPHLPNASGSSVYQPPYTP 171
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 23.8 bits (49), Expect = 8.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 215 PAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQPPYRPP 334
P ++RP T+ PP RPS P+ A A P PP
Sbjct: 131 PTPQSELRPP---TSAPP-RPSIPPPSPASAPPIPSKAPP 166
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 23.8 bits (49), Expect = 8.0
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +1
Query: 259 PTTCKTKHSNTCIGLRKYATTLPSSNKSSN 348
P + KTKH + KY P ++ +S+
Sbjct: 112 PQSSKTKHGRNSVSFGKYGNAGPFNSDNSS 141
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 23.8 bits (49), Expect = 8.0
Identities = 7/25 (28%), Positives = 15/25 (60%)
Frame = +2
Query: 272 RPSTQTPASAYANMQPPYRPPTRAP 346
+P+ Q P + + + + P++ P AP
Sbjct: 286 KPAEQAPENPFRDPENPFKDPASAP 310
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 23.8 bits (49), Expect = 8.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 98 VKSNGLCGLPCVELKQHKEVLFQ 30
+KSNG GLP V +K L Q
Sbjct: 789 IKSNGFKGLPIVVIKSITRQLIQ 811
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,304
Number of Sequences: 5004
Number of extensions: 37491
Number of successful extensions: 178
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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