Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C21
         (358 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       30   0.009
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   3.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   3.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   3.3  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   3.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   4.4  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   5.8  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   5.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   5.8  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   5.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.8  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          20   7.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   7.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   7.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.9 bits (64), Expect = 0.009
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 227 PQIRPTPRWTAQPPVRPSTQTPASAYANMQPPYRPPTRAPTQ 352
           P  +P+P  + Q P R S   P+       PP  PP++ P+Q
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQ 62



 Score = 20.6 bits (41), Expect = 5.8
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 260 QPPVRPSTQTPASAYANMQP-PYRPPTRAPTQAA 358
           QP +   +Q P+S     QP P++ P +AP + +
Sbjct: 6   QPIITQQSQQPSSGAPGPQPSPHQSP-QAPQRGS 38


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 171 PPALLGWNI 145
           PP LLGWN+
Sbjct: 17  PPRLLGWNV 25


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 282 VLGLTGGWAVHRGVGRICGICAGP*KRCAGGMVGTKYPP 166
           V GL G  + H GVGR  G      K  A G++   + P
Sbjct: 138 VQGLRGLKSCHTGVGRNVGYKIPITKLTAMGVLNNLHDP 176


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 282 VLGLTGGWAVHRGVGRICGICAGP*KRCAGGMVGTKYPP 166
           V GL G  + H GVGR  G      K  A G++   + P
Sbjct: 138 VQGLRGLKSCHTGVGRNVGYKIPITKLTAMGVLNNLHDP 176


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 282 VLGLTGGWAVHRGVGRICGICAGP*KRCAGGMVGTKYPP 166
           V GL G  + H GVGR  G      K  A G++   + P
Sbjct: 138 VQGLRGLKSCHTGVGRNVGYKIPITKLTAMGVLNNLHDP 176


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 190 TSCTTLLWSSTNAANT 237
           T CTT  WS    A T
Sbjct: 199 TCCTTXWWSXXTVAXT 214


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 242 TPRWTAQPPVRPSTQTPASA 301
           TP   A PP  PS+  P SA
Sbjct: 337 TPPKPAPPPPPPSSSGPDSA 356


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 264 GWAVHRGVGRICGIC 220
           GW V R  G++ G C
Sbjct: 140 GWTVERKEGKVEGKC 154


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 264 GWAVHRGVGRICGIC 220
           GW V R  G++ G C
Sbjct: 156 GWTVERKEGKVEGKC 170


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 264 GWAVHRGVGRICGIC 220
           GW V R  G++ G C
Sbjct: 213 GWTVERKEGKVEGKC 227


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 129 IRILAMRCMYCEVK 88
           +RI   RC YC +K
Sbjct: 64  LRINRNRCQYCRLK 77


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 129 IRILAMRCMYCEVK 88
           +RI   RC YC +K
Sbjct: 113 LRINRNRCQYCRLK 126


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 5/20 (25%), Positives = 12/20 (60%)
 Frame = -3

Query: 218 LDHKSVVQEVWWEQSILLHY 159
           +  K V+  VWW+   ++++
Sbjct: 61  IHRKKVLLSVWWDYKGIVYF 80


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 195 LHNAFMVQHKCRKYD 239
           LHN   +QH  ++ D
Sbjct: 455 LHNVMFIQHHIQRQD 469


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 5/20 (25%), Positives = 12/20 (60%)
 Frame = -3

Query: 218 LDHKSVVQEVWWEQSILLHY 159
           +  K V+  VWW+   ++++
Sbjct: 183 IHRKKVLLSVWWDYKGIVYF 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,734
Number of Sequences: 438
Number of extensions: 3349
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)