Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C20
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      38   9e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    37   0.002
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    35   0.006
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    35   0.008
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    34   0.014
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    32   0.044
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    32   0.044
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    31   0.13 
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    29   0.54 
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   0.94 
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    27   2.2  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   2.9  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    26   3.8  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   3.8  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   5.0  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   5.0  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   5.0  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   6.7  

>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 37.9 bits (84), Expect = 9e-04
 Identities = 25/77 (32%), Positives = 34/77 (44%)
 Frame = +3

Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDS 317
           S+ V N+ Y  TPE+L+  F  CG V  + I  D++T                   AL  
Sbjct: 56  SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-L 114

Query: 318 LDGRMLDGRELRVQMAR 368
           L+G ML  R L+V   R
Sbjct: 115 LNGSMLHERPLKVTPKR 131


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = +3

Query: 141 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDSL 320
           L V N+ +  T ED++ +FE  G++  +++ RD   R S                AL+ +
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNR-SKGFGYIQYRNPISARNALEKM 400

Query: 321 DGRMLDGRELRV 356
           +G  L GR +RV
Sbjct: 401 NGFDLAGRNMRV 412



 Score = 29.1 bits (62), Expect = 0.41
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = +3

Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDSLDG 326
           V  L  R T  +L   FE+ G V D  I RD+ +  S              + A+ +L G
Sbjct: 244 VSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI-ALSG 302

Query: 327 RMLDGRELRVQM 362
           + L G  + VQ+
Sbjct: 303 KRLLGLPVIVQL 314


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 35.1 bits (77), Expect = 0.006
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +3

Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDSLDG 326
           V NL++ TT E +  +F +CGE+  I +  DR+T+                 ++L  +  
Sbjct: 36  VGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYISR 95

Query: 327 RMLDGRELRVQM 362
             LD R +R  +
Sbjct: 96  TSLDERIIRADL 107


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 34.7 bits (76), Expect = 0.008
 Identities = 25/90 (27%), Positives = 37/90 (41%)
 Frame = +3

Query: 99  SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXX 278
           S   P P+ D    + V NL +    E L R F  CG +  + I RD  T          
Sbjct: 259 SVSHPMPQ-DTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQ 317

Query: 279 XXXXXXXEEALDSLDGRMLDGRELRVQMAR 368
                  ++AL   + +M +GR LR+  A+
Sbjct: 318 FKDTMGVDKALLLNEKKMPEGRTLRIMRAK 347


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 33.9 bits (74), Expect = 0.014
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = +3

Query: 153 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDSLDGRM 332
           NLTY    +DL+ +F   G++  +++P D+ T                   A   LD + 
Sbjct: 329 NLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKP 388

Query: 333 LDGRELRVQMAR 368
             GR L V  A+
Sbjct: 389 FQGRLLHVLPAK 400


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 32.3 bits (70), Expect = 0.044
 Identities = 16/73 (21%), Positives = 32/73 (43%)
 Frame = +3

Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDSLDG 326
           V NL++  T +DL   F  CG++  I +P D  +                 ++ ++ ++G
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNG 428

Query: 327 RMLDGRELRVQMA 365
             + GR  R+  +
Sbjct: 429 HFIAGRPCRLDFS 441


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 32.3 bits (70), Expect = 0.044
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
 Frame = +3

Query: 111 PPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXX 290
           P  R DG   + +  L + TT + LR  FE+ GEV D  + RD  T  S           
Sbjct: 157 PFNREDG--KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNP 214

Query: 291 XXXEEALDS---LDGRMLD 338
               E +     LDG+++D
Sbjct: 215 KCVNEVMSKEHHLDGKIID 233


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +3

Query: 120 RIDGMVSLKVDNLTYRTT-PEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXX 296
           R D    L + NL +    P+ L   F + G+V +I IP     R               
Sbjct: 102 RQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAA 161

Query: 297 XEEALDSLDGRMLDGRELRVQMA 365
            EEA++SL+G  +DGR + V  A
Sbjct: 162 -EEAMNSLNGTEIDGRPIAVDWA 183


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 28.7 bits (61), Expect = 0.54
 Identities = 15/67 (22%), Positives = 28/67 (41%)
 Frame = +3

Query: 168 TTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDSLDGRMLDGRE 347
           T  EDL  +F R G++    + RD+ T +S              E+A   +   ++D   
Sbjct: 255 TQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSR 314

Query: 348 LRVQMAR 368
           + V  ++
Sbjct: 315 IHVDFSQ 321


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 126 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDR 242
           D  V L V NL   ++ E L+  F+R G+V  + IP D+
Sbjct: 89  DRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDK 127


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 20/76 (26%), Positives = 31/76 (40%)
 Frame = +3

Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDS 317
           ++ + NL  + T   L  +  + G V +I+IPRDR                   E A   
Sbjct: 12  TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71

Query: 318 LDGRMLDGRELRVQMA 365
           L+   L G+ +RV  A
Sbjct: 72  LNQVKLFGKPIRVNRA 87


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 190  AYLKDAERSVISTYPEIVTHEKVEVLLL*DSLTAEMLKKPWTHLMGGC 333
            AY       ++S   EI+T++K E          EM+KK W   + GC
Sbjct: 1436 AYSVAVRVQMLSELEEIITYKKAED----KPEVREMIKKTWVRRLKGC 1479


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 246 CNDLWVCRYHRPLRIFQIRDGDLQESSDKLN 154
           CND+   RYH    +F+++D  L    D L+
Sbjct: 641 CNDIIPGRYHLKTIVFKLKDSVLSFQKDCLH 671


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 282 RILQKQNLYFLVCNDLWVCRYHRPLRIFQIRDGDLQE 172
           R+ +  NL F  CN  WV      L I+Q +  DL++
Sbjct: 441 RLFETYNLIF-PCNQYWVFNLEFLLGIYQCKTFDLED 476


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 116  RRPSVTHFDY*YRSSQNTKNSTSDERTNK 30
            R+PS+ H    Y +  +   STSDE T++
Sbjct: 963  RKPSLLHTSKSYSNPDDKNTSTSDEDTSE 991


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 19/76 (25%), Positives = 33/76 (43%)
 Frame = +3

Query: 141 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDSL 320
           L V N+ ++   +D+   F   G+V  + IP+ R+ +                E AL S 
Sbjct: 759 LYVTNIDFKVNEKDVETFFRDYGQVESVRIPK-RFNQHK-GFGYVVMTTNQDAENAL-SA 815

Query: 321 DGRMLDGRELRVQMAR 368
            G+ L  R L V +++
Sbjct: 816 AGKQLGNRVLNVVLSK 831


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 393 CRVMRVCHNAPSVLGAPYRLTSAHQVSPGLLQH 295
           CR+++ C      L AP+  +SA+     LL H
Sbjct: 549 CRIIQDCTELSISLAAPFTASSAYLAGTVLLYH 581


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 272 KSKTSTFSCVTISGYVDITD 213
           K KT  F C+   G+VD  D
Sbjct: 205 KGKTFAFQCIDTPGHVDFVD 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,656,896
Number of Sequences: 5004
Number of extensions: 29305
Number of successful extensions: 92
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)