Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_C20
(512 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 106 1e-23
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 106 1e-23
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 44 5e-05
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 43 1e-04
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 40 0.001
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 39 0.002
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 39 0.002
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 38 0.003
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 38 0.003
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 38 0.003
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 36 0.017
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 36 0.017
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 36 0.017
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 36 0.022
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 35 0.030
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 35 0.030
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 35 0.039
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 34 0.052
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 34 0.052
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 33 0.12
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 32 0.21
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 32 0.21
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 31 0.64
AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical ... 30 0.85
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 29 2.6
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 29 2.6
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 28 4.5
AF166168-1|AAD49857.1| 679|Caenorhabditis elegans adducin-relat... 28 4.5
AF166167-1|AAD49856.1| 732|Caenorhabditis elegans adducin-relat... 28 4.5
AF039043-6|AAP82653.1| 718|Caenorhabditis elegans Adducin prote... 28 4.5
AF039043-5|AAK70639.1| 732|Caenorhabditis elegans Adducin prote... 28 4.5
AF039043-4|AAL32219.1| 702|Caenorhabditis elegans Adducin prote... 28 4.5
AF039043-3|AAM54181.1| 682|Caenorhabditis elegans Adducin prote... 28 4.5
AF039043-2|AAK70638.1| 679|Caenorhabditis elegans Adducin prote... 28 4.5
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 27 7.9
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 106 bits (254), Expect = 1e-23
Identities = 46/88 (52%), Positives = 63/88 (71%)
Frame = +3
Query: 108 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXX 287
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+Y+R+S
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYE 69
Query: 288 XXXXEEALDSLDGRMLDGRELRVQMARY 371
E ALD DG+++DGRELRV +A+Y
Sbjct: 70 RRDAEHALDRTDGKLVDGRELRVTLAKY 97
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 106 bits (254), Expect = 1e-23
Identities = 46/88 (52%), Positives = 63/88 (71%)
Frame = +3
Query: 108 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXX 287
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+Y+R+S
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYE 69
Query: 288 XXXXEEALDSLDGRMLDGRELRVQMARY 371
E ALD DG+++DGRELRV +A+Y
Sbjct: 70 RRDAEHALDRTDGKLVDGRELRVTLAKY 97
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 44.4 bits (100), Expect = 5e-05
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = +3
Query: 123 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXE 302
+ G+ S+ V N ++TT E+L F G++ ++ I DR T +
Sbjct: 1 MSGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQ 60
Query: 303 EALDSLDGRMLDGRELRVQMA 365
A++ ++G +GR LRV +A
Sbjct: 61 RAVEQMNGAEFNGRPLRVNLA 81
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDS 317
S+ V N ++TT +DL F + G V ++ I DR T + A+D
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 318 LDGRMLDGRELRVQMAR 368
+G +GR LRV +A+
Sbjct: 65 FNGVDFNGRALRVNLAQ 81
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDS 317
S+ V N+ Y+ T E++ F G V ++ I DR T + A++
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 318 LDGRMLDGRELRVQMA 365
L+G +GR LRV A
Sbjct: 67 LNGVAFNGRNLRVNYA 82
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/80 (31%), Positives = 36/80 (45%)
Frame = +3
Query: 126 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEE 305
DG L V N+ +R DL+ +FE+ G V D+ I + R S E
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNE--RGSKGFGFVTMERPQDAER 207
Query: 306 ALDSLDGRMLDGRELRVQMA 365
A L G M++GR++ V A
Sbjct: 208 ARQELHGSMIEGRKIEVNCA 227
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/80 (31%), Positives = 36/80 (45%)
Frame = +3
Query: 126 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEE 305
DG L V N+ +R DL+ +FE+ G V D+ I + R S E
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNE--RGSKGFGFVTMERPQDAER 207
Query: 306 ALDSLDGRMLDGRELRVQMA 365
A L G M++GR++ V A
Sbjct: 208 ARQELHGSMIEGRKIEVNCA 227
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +3
Query: 168 TTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDSLDGRMLDGRE 347
TT EDL +F R G++ + I RDR + +S E+A +D ++D R
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRR 311
Query: 348 LRVQMAR 368
+ V ++
Sbjct: 312 IHVDFSQ 318
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +3
Query: 168 TTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDSLDGRMLDGRE 347
TT EDL +F R G++ + I RDR + +S E+A +D ++D R
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRR 311
Query: 348 LRVQMAR 368
+ V ++
Sbjct: 312 IHVDFSQ 318
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +3
Query: 168 TTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDSLDGRMLDGRE 347
TT EDL +F R G++ + I RDR + +S E+A +D ++D R
Sbjct: 183 TTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRR 242
Query: 348 LRVQMAR 368
+ V ++
Sbjct: 243 IHVDFSQ 249
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 35.9 bits (79), Expect = 0.017
Identities = 18/77 (23%), Positives = 37/77 (48%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDS 317
S+ + N+ + +T E++ F+ CG++ IP+D++T++ E AL
Sbjct: 56 SVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENAL-V 114
Query: 318 LDGRMLDGRELRVQMAR 368
++G + R + V R
Sbjct: 115 MNGSLFRSRPIVVTAKR 131
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 35.9 bits (79), Expect = 0.017
Identities = 21/88 (23%), Positives = 39/88 (44%)
Frame = +3
Query: 111 PPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXX 290
P + G L V NL +L+ +F G++ + Y+ +
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSGKGFA-------FLRLDTR 160
Query: 291 XXXEEALDSLDGRMLDGRELRVQMARYG 374
E A +++DGR++ GR++RV+ A +G
Sbjct: 161 AHAESAKEAIDGRIIHGRQVRVRFAVHG 188
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 35.9 bits (79), Expect = 0.017
Identities = 21/88 (23%), Positives = 39/88 (44%)
Frame = +3
Query: 111 PPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXX 290
P + G L V NL +L+ +F G++ + Y+ +
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSGKGFA-------FLRLDTR 160
Query: 291 XXXEEALDSLDGRMLDGRELRVQMARYG 374
E A +++DGR++ GR++RV+ A +G
Sbjct: 161 AHAESAKEAIDGRIIHGRQVRVRFAVHG 188
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 35.5 bits (78), Expect = 0.022
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDS 317
S+ V N+ Y T E++ + F CG V + I DR++ + AL
Sbjct: 79 SVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAM 138
Query: 318 LDGRMLDGRELRVQMAR 368
D +L GR+++V R
Sbjct: 139 TDS-LLRGRQIKVDPKR 154
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 35.1 bits (77), Expect = 0.030
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +3
Query: 153 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDSLDGRM 332
NL Y T +DL+ +F++ GEV ++ + D+ T A +LDG +
Sbjct: 285 NLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYV 344
Query: 333 LDGRELRV 356
GR + +
Sbjct: 345 FKGRMMHI 352
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 35.1 bits (77), Expect = 0.030
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDS 317
S+ V N+ +++T ++ F CG+V + IP+D++T + AL
Sbjct: 47 SVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLESVQLAL-V 105
Query: 318 LDGRMLDGRELRVQMAR 368
L G M R++ V + R
Sbjct: 106 LSGTMFRNRKIMVTLKR 122
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 34.7 bits (76), Expect = 0.039
Identities = 24/75 (32%), Positives = 32/75 (42%)
Frame = +3
Query: 141 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDSL 320
L V NL+ TT +DLR VF GE+ + DR + S A D L
Sbjct: 78 LGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAARDKL 137
Query: 321 DGRMLDGRELRVQMA 365
LDG ++RV +
Sbjct: 138 CNTDLDGHKIRVDFS 152
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 34.3 bits (75), Expect = 0.052
Identities = 18/77 (23%), Positives = 36/77 (46%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDS 317
S+ + N+ + +T E++ F+ CG + IP+D++T++ E AL
Sbjct: 62 SVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENAL-V 120
Query: 318 LDGRMLDGRELRVQMAR 368
++G + R + V R
Sbjct: 121 MNGSLFRSRPIVVTAKR 137
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 34.3 bits (75), Expect = 0.052
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = +3
Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDSLDG 326
V L Y T+ + L FE+ G++ + + DR T++S E A
Sbjct: 39 VGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKD-PN 97
Query: 327 RMLDGRELRVQMARYG 374
++DGR+ V +A G
Sbjct: 98 PIIDGRKANVNLAYLG 113
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 33.1 bits (72), Expect = 0.12
Identities = 19/81 (23%), Positives = 35/81 (43%)
Frame = +3
Query: 126 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEE 305
+ +L ++ L T E++R +F GE+ + RD+ T +S
Sbjct: 39 ESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALR 98
Query: 306 ALDSLDGRMLDGRELRVQMAR 368
A+ S +G L + ++V AR
Sbjct: 99 AVSSFNGLRLQNKTIKVSYAR 119
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 32.3 bits (70), Expect = 0.21
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDS 317
+L V NL+Y T + + +F R G+V + + DR+ + E AL +
Sbjct: 38 TLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELALQN 97
Query: 318 LDGRMLDGRELR 353
+ +D R +R
Sbjct: 98 ISNTRMDDRVIR 109
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 32.3 bits (70), Expect = 0.21
Identities = 22/86 (25%), Positives = 31/86 (36%)
Frame = +3
Query: 108 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXX 287
R P + V +L LR F + GEV + I RD T +
Sbjct: 123 RSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPR 182
Query: 288 XXXXEEALDSLDGRMLDGRELRVQMA 365
E A+D ++G L R +R A
Sbjct: 183 REDAERAIDEMNGAWLGRRTIRTNWA 208
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 30.7 bits (66), Expect = 0.64
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +3
Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDSLDG 326
+ L+Y + D+ VF + GEV +I + RD+ T +S A+D+ +G
Sbjct: 42 IGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNG 101
Query: 327 RMLDGRELRV 356
L R +RV
Sbjct: 102 ISLHKRMIRV 111
>AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical
protein Y65B4A.1 protein.
Length = 442
Score = 30.3 bits (65), Expect = 0.85
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Frame = +3
Query: 126 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVG-DIYI--PRDRYTRESXXXXXXXXXXXXX 296
D + ++ V NL T E+ ++ +CG + DI P+ + RE
Sbjct: 176 DKVHAVYVSNLPEDITDEEFQKFMSKCGVIQPDIRTNKPKCKLYREENGKLKGDGRCCYI 235
Query: 297 XEEALDS----LDGRMLDGRELRVQMARY 371
+E+++ LDG L+GRE++V+ AR+
Sbjct: 236 KKESVELACNILDGANLNGREVKVEEARF 264
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 114 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 248
P + + L V + +DLR +FE+ G++ + I +D+YT
Sbjct: 22 PVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYT 66
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 114 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 248
P + + L V + +DLR +FE+ G++ + I +D+YT
Sbjct: 22 PVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYT 66
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +3
Query: 147 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRE-SXXXXXXXXXXXXXXEEALDSLD 323
+ NL+ L +F G + ++ +P DR+ E+++ +D
Sbjct: 137 IKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMD 196
Query: 324 GRMLDGRELRVQM 362
G +DG + V+M
Sbjct: 197 GGQIDGMAVHVEM 209
>AF166168-1|AAD49857.1| 679|Caenorhabditis elegans adducin-related
protein protein.
Length = 679
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 369 NAPSVLGAPYRLTSAHQVSP 310
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>AF166167-1|AAD49856.1| 732|Caenorhabditis elegans adducin-related
protein protein.
Length = 732
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 369 NAPSVLGAPYRLTSAHQVSP 310
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>AF039043-6|AAP82653.1| 718|Caenorhabditis elegans Adducin protein
1, isoform e protein.
Length = 718
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 369 NAPSVLGAPYRLTSAHQVSP 310
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>AF039043-5|AAK70639.1| 732|Caenorhabditis elegans Adducin protein
1, isoform b protein.
Length = 732
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 369 NAPSVLGAPYRLTSAHQVSP 310
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>AF039043-4|AAL32219.1| 702|Caenorhabditis elegans Adducin protein
1, isoform c protein.
Length = 702
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 369 NAPSVLGAPYRLTSAHQVSP 310
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>AF039043-3|AAM54181.1| 682|Caenorhabditis elegans Adducin protein
1, isoform d protein.
Length = 682
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 369 NAPSVLGAPYRLTSAHQVSP 310
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>AF039043-2|AAK70638.1| 679|Caenorhabditis elegans Adducin protein
1, isoform a protein.
Length = 679
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 369 NAPSVLGAPYRLTSAHQVSP 310
N PS G P +++S HQ SP
Sbjct: 459 NVPSASGTPVKISSVHQFSP 478
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/77 (24%), Positives = 29/77 (37%)
Frame = +3
Query: 138 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESXXXXXXXXXXXXXXEEALDS 317
+L V + Y T+ LRR FE G++ + + D + A
Sbjct: 105 TLFVGRINYETSESKLRREFEAYGKIKKLTMVHDE-AGKPRGYAFIEYSDKAEMHTAYKK 163
Query: 318 LDGRMLDGRELRVQMAR 368
DG +DG+ L V R
Sbjct: 164 ADGIKVDGKRLVVDYER 180
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,286,359
Number of Sequences: 27780
Number of extensions: 170729
Number of successful extensions: 473
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -