Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C19
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po...    25   3.9  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    25   6.7  
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    24   8.9  

>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 332 KYSQRSLKQTMQEPSSLPEHAPSRTTILE*QIL*KHFHKTEPMILWTHYD 183
           K   +SLK  + +PS LPE A    ++++     K +    P   W H++
Sbjct: 25  KAESQSLKSFLYDPSKLPEVADFVVSVIQADFKGK-YSTIPPHGRWQHFE 73


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 188 NVSTKSSALFYGNAFIVSAIPIWLFWRVHALEVSSALAWFVL 313
           N   K S +  G++F+      +  WR   L + SAL+WF+L
Sbjct: 331 NTEGKESDIQTGSSFV----SYFKEWRHAKLLIGSALSWFLL 368


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 238 ICYSNMVVLEGACSGSELGSCMVC 309
           + ++N + LEGAC GS   +C  C
Sbjct: 544 LAHANNIDLEGACEGSV--ACSTC 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,741,837
Number of Sequences: 5004
Number of extensions: 34144
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)