Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_C19
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0318 + 27856187-27856879,27857050-27857385,27858743-27859495 30 0.71
11_01_0446 + 3462820-3464265 29 1.6
09_06_0067 - 20645012-20645095,20645365-20645466,20645583-206458... 27 5.0
12_02_1228 - 27190983-27191291,27191442-27191675,27191994-271922... 27 6.6
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 27 6.6
01_05_0773 + 25062364-25062894,25063000-25063244,25063365-250637... 27 6.6
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252... 27 8.7
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 27 8.7
03_03_0253 + 15871870-15871949,15872101-15872170,15872666-158727... 27 8.7
01_05_0334 - 21068575-21068642,21068723-21068813,21068955-210690... 27 8.7
>02_05_0318 + 27856187-27856879,27857050-27857385,27858743-27859495
Length = 593
Score = 30.3 bits (65), Expect = 0.71
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 223 KCFHSICYSNMVVLEGACSGSELGSCMVCF 312
K + +SN+V LEG C SE G C + +
Sbjct: 339 KILQKVNHSNLVKLEGFCINSETGDCYLVY 368
>11_01_0446 + 3462820-3464265
Length = 481
Score = 29.1 bits (62), Expect = 1.6
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +2
Query: 245 IPIWLFWRVHALEVSSALAWFVLVTAAS 328
+P+WL W +HA S + W+ + ++A+
Sbjct: 148 VPLWLMWSIHA----SRIVWYYITSSAA 171
>09_06_0067 -
20645012-20645095,20645365-20645466,20645583-20645828,
20646042-20646236,20646343-20646636,20646952-20647134,
20647534-20647593,20647796-20648002,20648081-20648282,
20648367-20648494,20648759-20648842,20648955-20649134,
20649281-20649372,20649620-20649789,20650226-20650337,
20650451-20650554,20651262-20651371
Length = 850
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 353 GMPVQVTKYSQRSLKQTMQEPSSLPEHAPSRT 258
GMP + K++QR L++ + P ++ SRT
Sbjct: 313 GMPANIWKHAQRELRRLRKMQPQQPGYSSSRT 344
>12_02_1228 -
27190983-27191291,27191442-27191675,27191994-27192269,
27192420-27192696,27192985-27193283,27193341-27193454,
27193909-27194118,27194567-27194699,27194941-27195221
Length = 710
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 138 IKHSRRKKSYCCRIL 182
I HS RK+S CC++L
Sbjct: 383 ISHSERKRSACCKVL 397
>08_01_0114 -
900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 295 SCMVCFSDRCEYLVTCTGIPQ 357
SC++C S C+ V TG P+
Sbjct: 922 SCVLCLSGNCKTCVNLTGFPE 942
>01_05_0773 +
25062364-25062894,25063000-25063244,25063365-25063749,
25063857-25064282
Length = 528
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 243 LFQYGCSGGCMLWK*ARLLHGLF**PLRV 329
L YG G +LW+ RLLH L+ P R+
Sbjct: 17 LLAYGVLGLVLLWQAGRLLHSLWWRPRRL 45
>03_05_0650 -
26423829-26424179,26424379-26424612,26424961-26425236,
26425372-26425648,26425751-26425764,26425843-26425989,
26426306-26426366,26426570-26426604,26426688-26426882,
26428230-26428439,26428865-26428940,26429519-26429799
Length = 718
Score = 26.6 bits (56), Expect = 8.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 138 IKHSRRKKSYCCRIL 182
+ HS RK+S CC++L
Sbjct: 377 VSHSERKRSACCKVL 391
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 260 FWRVHALEVSSALAWFVLVTAASTWLLAL 346
FW + + + ++LAW V+ + WLLAL
Sbjct: 347 FWTIGTI-LEASLAWVVISVLSWRWLLAL 374
>03_03_0253 +
15871870-15871949,15872101-15872170,15872666-15872701,
15873576-15873630,15873859-15873941,15874019-15874850,
15875184-15875286,15875359-15875498,15875649-15875880,
15876203-15876338,15877208-15877302,15877381-15877504,
15877690-15877812
Length = 702
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +1
Query: 241 CYSNMVVLEGACSGSELGSCMVCFSDRCEY 330
CYS + L G + CMV F+D +
Sbjct: 401 CYSELSNLSDIPDGERINQCMVTFTDEARH 430
>01_05_0334 -
21068575-21068642,21068723-21068813,21068955-21069071,
21069166-21069219,21069334-21070004,21070445-21070473,
21070576-21070643,21072382-21072621
Length = 445
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = -2
Query: 426 RDISRATASSLRTATRCFS*NLVLRYASASNQVLAAVTKTNHARAELTSRACT 268
R+ S + + L A C S L+LRYA A+ + +V+ T+ A + SRAC+
Sbjct: 178 RNQSDVSTALLFLAVLCHSAPLLLRYAVAAGE--HSVSATSAAASLDLSRACS 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,981,705
Number of Sequences: 37544
Number of extensions: 215583
Number of successful extensions: 544
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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