Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C19
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025715-7|AAK68443.1|  178|Caenorhabditis elegans Hypothetical ...    73   1e-13
Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical p...    31   0.48 
AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical ...    31   0.48 
Z74034-1|CAA98479.1|  313|Caenorhabditis elegans Hypothetical pr...    30   0.64 
U41109-1|ABC48251.1|  248|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z35604-3|CAA84679.1|  352|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AC006679-2|AAK84465.2|  425|Caenorhabditis elegans Ligand-gated ...    27   4.5  
Z75711-8|CAJ43907.1|  118|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z36752-2|CAA85324.1|  371|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF025464-2|AAN84804.1|  496|Caenorhabditis elegans Prion-like-(q...    27   7.9  
AF025464-1|AAN84805.1|  529|Caenorhabditis elegans Prion-like-(q...    27   7.9  

>AC025715-7|AAK68443.1|  178|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.2 protein.
          Length = 178

 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 35/77 (45%), Positives = 49/77 (63%)
 Frame = +2

Query: 149 TKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHALEVSSALAWFVLVTAAS 328
           TKEEELLL  +S   STK +  FY NA I+S  P++LF+ VH +E+  +L  + L    +
Sbjct: 5   TKEEELLLSSYSATSSTKGNLFFYLNALIISIAPLYLFYGVHQMEIQDSLVVWGLSAVGT 64

Query: 329 TWLLALAYRNTKFQLKH 379
            +LL+LA +N K  LKH
Sbjct: 65  AYLLSLACKNQKCLLKH 81


>Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical
           protein M01G12.12 protein.
          Length = 1579

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 199 KIIGSVLWKCFHSICYSNMVV 261
           K IGS+ WKCFH IC   +V+
Sbjct: 413 KRIGSI-WKCFHKICQKRLVM 432


>AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical
           protein M01G12.12 protein.
          Length = 1579

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 199 KIIGSVLWKCFHSICYSNMVV 261
           K IGS+ WKCFH IC   +V+
Sbjct: 413 KRIGSI-WKCFHKICQKRLVM 432


>Z74034-1|CAA98479.1|  313|Caenorhabditis elegans Hypothetical
           protein F43A11.1 protein.
          Length = 313

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 202 IIGSVLWKCFHSICYSNMVVLEGACSGSELGSCMVCFSDRCEYL 333
           I G+++W+C HS+     V L    + S+    MV F+DR  +L
Sbjct: 240 ISGTLIWECLHSV--DGFVRLIFVFTASKFRFIMVIFNDRLSFL 281


>U41109-1|ABC48251.1|  248|Caenorhabditis elegans Hypothetical
           protein F52E1.5 protein.
          Length = 248

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +1

Query: 241 CYSNMVVLEGACSGSELG--SCMVCFSD-RCEYLVTCTGI 351
           CY +     G C GSELG   C  C ++ +C   + C G+
Sbjct: 133 CYKDSECPSGKCFGSELGLCDCNACITNKKCSSDLDCGGL 172


>Z35604-3|CAA84679.1|  352|Caenorhabditis elegans Hypothetical
           protein ZK1058.3 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +2

Query: 140 KAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFW 265
           K F K  +++L D+    + K   +   N      +P W FW
Sbjct: 189 KHFEKHGKVMLMDYLEQETLKKERIIMRNEHWTWLVPYWAFW 230


>AC006679-2|AAK84465.2|  425|Caenorhabditis elegans Ligand-gated ion
           channel protein 12 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 108 YKNIQCQAKEIKHSRRKKSYCCRILVVMCP 197
           Y+++QC  K  K  RRK  Y   I+V++ P
Sbjct: 215 YRSVQCNEKSFKEVRRKPLY--YIVVILIP 242


>Z75711-8|CAJ43907.1|  118|Caenorhabditis elegans Hypothetical
           protein K02B12.9 protein.
          Length = 118

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -1

Query: 334 PSTRSGH*NKPCKSRAHFQSMHPPEQPYWNSRYY 233
           P   SGH  K      ++ S  P  QPY+   YY
Sbjct: 68  PKYNSGHDQK--SGNDYYSSYQPSHQPYYGGSYY 99


>Z36752-2|CAA85324.1|  371|Caenorhabditis elegans Hypothetical
           protein F35H8.2 protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 375 NIELLFEEKMLSLGKCLGNLL 437
           N E LF+E+M  LG C+ N+L
Sbjct: 137 NSEPLFKERMFRLGDCMVNVL 157


>AF025464-2|AAN84804.1|  496|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform a protein.
          Length = 496

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 205 IGSVLWKCFHSICYSNMVVLEGACSGSELGSCMVCFSDRCEYLVTCTGIP 354
           +GS++ KC +   Y   V + G CS S    C  CF    +   +C   P
Sbjct: 342 MGSLVSKCCNKGIYLTDVCIPGKCSNSTTQLC--CFQKFLQAKYSCCNDP 389


>AF025464-1|AAN84805.1|  529|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform b protein.
          Length = 529

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 205 IGSVLWKCFHSICYSNMVVLEGACSGSELGSCMVCFSDRCEYLVTCTGIP 354
           +GS++ KC +   Y   V + G CS S    C  CF    +   +C   P
Sbjct: 364 MGSLVSKCCNKGIYLTDVCIPGKCSNSTTQLC--CFQKFLQAKYSCCNDP 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,662,628
Number of Sequences: 27780
Number of extensions: 195916
Number of successful extensions: 459
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)