Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C18
         (332 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   0.97 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   2.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   3.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   3.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   3.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   3.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   6.8  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 0.97
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = +3

Query: 54  RTARKHVNHRRE----QRWADKEFKKAH--MGTRWKANPFGGASHAKGIVLEKVGVEAKQ 215
           RT  + + +RRE    Q+  ++E++K    M   ++       +H K +VLE+   ++K 
Sbjct: 30  RTKEERLQYRREAWLVQQEREQEYEKLKRKMILEYELYIKYSHTHEKKLVLERSKTKSKS 89

Query: 216 PNSAIR 233
           P S  R
Sbjct: 90  PESRDR 95


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +3

Query: 216 PNSAIRKCV 242
           PNSA+RKC+
Sbjct: 584 PNSAVRKCM 592


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 62  AQARESSSRAAMGRQGIQKSPHGYEMEGEPLRWCISC*GH 181
           A + E+S+ A    + + K P  + +     RW  SC G+
Sbjct: 34  ATSHEASAPAEGKFKTVSKVPGPFSLPIFGTRWIFSCIGY 73


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
 Frame = -3

Query: 75  SRACAPCEYPEV--YP 34
           S  CA CE PEV  YP
Sbjct: 216 SNMCALCEKPEVCDYP 231


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
 Frame = -3

Query: 75  SRACAPCEYPEV--YP 34
           S  CA CE PEV  YP
Sbjct: 216 SNMCALCEKPEVCDYP 231


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
 Frame = -3

Query: 75  SRACAPCEYPEV--YP 34
           S  CA CE PEV  YP
Sbjct: 216 SNMCALCEKPEVCDYP 231


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 124 TWVRDGRRTP 153
           TW +DGR+ P
Sbjct: 366 TWYKDGRQLP 375


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 124 TWVRDGRRTP 153
           TW +DGR+ P
Sbjct: 366 TWYKDGRQLP 375


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 141 SISYPCGLF*IPCRPIAARD 82
           ++SY  G + IP   I++RD
Sbjct: 113 AVSYTSGFYHIPVIGISSRD 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,543
Number of Sequences: 438
Number of extensions: 1919
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)