Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_C17
(231 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0438 - 33917678-33918084,33929568-33930402,33931055-339313... 29 0.70
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442... 27 2.8
06_01_1205 - 10406603-10406651,10407013-10407476 27 2.8
09_04_0237 - 15936630-15937250,15937457-15937534,15938874-159389... 26 3.7
07_01_0370 + 2749353-2749786,2749949-2750346,2750435-2750519,275... 26 3.7
05_02_0063 + 6260447-6260688,6261214-6261322 26 3.7
05_01_0511 + 4256220-4256828,4256920-4257175,4257247-4257309,425... 26 3.7
04_03_0368 + 15004949-15005659,15005789-15005848 26 3.7
02_05_0869 - 32344821-32344916,32345255-32345347,32345418-323455... 26 3.7
01_01_1155 + 9191249-9192439 26 3.7
11_06_0115 + 20288220-20288303,20289223-20289706,20290160-202903... 26 4.9
04_04_0353 - 24623452-24623691,24623871-24624134,24624264-24624449 26 4.9
04_03_0241 - 13243938-13244453,13244538-13246334 26 4.9
04_03_0142 + 11773124-11774158 26 4.9
02_05_1068 + 33862378-33863640 26 4.9
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613... 25 6.5
06_03_0934 - 26073084-26073220,26073296-26073345,26073465-260736... 25 6.5
02_02_0643 + 12590928-12592172,12592609-12592698 25 6.5
08_01_0878 + 8624616-8624761,8625861-8626274,8626895-8626945,862... 25 8.6
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910... 25 8.6
03_03_0164 - 14979364-14979479,14979613-14980102 25 8.6
>03_06_0438 -
33917678-33918084,33929568-33930402,33931055-33931335,
33931358-33931451,33931549-33931857
Length = 641
Score = 28.7 bits (61), Expect = 0.70
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 122 IETAPGSGGSVTAHQWAARRGPTPSGPIGAYRGR 21
++ AP G +T HQW R P + P GR
Sbjct: 280 VQDAPSQGQELTRHQWVHRNLPNSTVPWQELTGR 313
>12_01_1111 +
11842837-11843094,11843142-11843255,11843267-11844247,
11861747-11862025,11862998-11863098,11863723-11863792,
11863947-11863974,11864057-11864114,11864440-11864536
Length = 661
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 149 RPRSRTTEVIETAPGSGGSVTAHQWAARRGPTPSGPIGA 33
+PR+RT E + G GG +H+ A G PSG A
Sbjct: 483 KPRTRTLETLTMDSGGGGG-ASHK--AASGSAPSGAAAA 518
>06_01_1205 - 10406603-10406651,10407013-10407476
Length = 170
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 104 SGGSVTAHQWAARRGPTPSGPIGAYRGRSARAS 6
SGG + H+W TP G+ GRSA S
Sbjct: 9 SGGGDSPHRWEEANSKTPRLQPGSAGGRSAAPS 41
>09_04_0237 -
15936630-15937250,15937457-15937534,15938874-15938973,
15940414-15942278
Length = 887
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2
Query: 113 APGSGGSVTAHQWAARRGPTPSGPIGAYRGRSARA 9
AP GG A + AAR P GA GR ARA
Sbjct: 178 APRHGGRRPAARMAARAAPGTGHARGAGNGRWARA 212
>07_01_0370 +
2749353-2749786,2749949-2750346,2750435-2750519,
2751200-2751314,2751538-2751591
Length = 361
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Frame = -2
Query: 161 TIKIRPRSRTTEVIETAP---GSGGSVTAHQWAARRGPT 54
T+ R + VI P G GG V H WAA PT
Sbjct: 9 TVLAGRRRAASVVIAAGPRYGGGGGGVHVHPWAAFPSPT 47
>05_02_0063 + 6260447-6260688,6261214-6261322
Length = 116
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 116 TAPGSGGSVTAHQWAARRGPTPSGPIGA 33
T+ GSGGSV +W R P SG G+
Sbjct: 21 TSRGSGGSVLLREWQGRPPPV-SGDSGS 47
>05_01_0511 +
4256220-4256828,4256920-4257175,4257247-4257309,
4257397-4257491
Length = 340
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 10 ARADLPRYAPMGPEGVGPRRAAH*WAVTDPPDPG 111
A+AD P P +GPR AAH T PP G
Sbjct: 258 AQADAAPQRP--PRPIGPRPAAHVHRPTPPPHRG 289
>04_03_0368 + 15004949-15005659,15005789-15005848
Length = 256
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 101 GGSVTAHQWAARRGPTPSGPIGAYRGRSAR 12
GG+ A AA R P P+G G R RS R
Sbjct: 55 GGAEPARAAAAARPPDPAGAGGEARRRSGR 84
>02_05_0869 -
32344821-32344916,32345255-32345347,32345418-32345551,
32345863-32346013,32346337-32346407,32346683-32346828,
32347172-32347221,32347552-32347628,32347716-32347776,
32347859-32347912,32347999-32348058,32348491-32348624,
32349740-32350418
Length = 601
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -2
Query: 119 ETAPGSGGSVTAHQWAARRGPTPSGPIGAYRGRSARA 9
E APGSGG+ A AAR+G G Y+G R+
Sbjct: 7 EAAPGSGGNAAAA--AARQGGGGGGRGRQYKGVRMRS 41
>01_01_1155 + 9191249-9192439
Length = 396
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 122 IETAPGSGGSVTAHQWAARRGPTPSGPIG 36
+ APG GG+ AA GP P+G IG
Sbjct: 181 VPAAPGGGGAT-----AAAAGPAPAGTIG 204
>11_06_0115 +
20288220-20288303,20289223-20289706,20290160-20290393,
20291811-20292770,20292931-20293404,20293406-20294664
Length = 1164
Score = 25.8 bits (54), Expect = 4.9
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Frame = +1
Query: 19 DLPRYAPMGPEGVGPRRAA-H*WAVTDPPD------PGAVSMTSVVRDRGLILMVLR 168
DLP+ P+ P GP A+ H + ++P D GA ++ V R+R +L R
Sbjct: 262 DLPKVQPVAPPPPGPSPASNHHFVPSNPCDTVPKLGSGATTVACVPRERDALLAFKR 318
>04_04_0353 - 24623452-24623691,24623871-24624134,24624264-24624449
Length = 229
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -2
Query: 113 APGSGGSVTAHQWAARRGPTPSGPIGAYRGRSARAS 6
+P GGS A P P+ +G Y+ AR S
Sbjct: 173 SPAKGGSTAAEVPELFASPQPASNMGLYKASGARQS 208
>04_03_0241 - 13243938-13244453,13244538-13246334
Length = 770
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 70 AAH*WAVTDPPDPGAVSMTSVVRD 141
AA WA+ PP GA+ + V+R+
Sbjct: 35 AAVSWAIRAPPSTGALEIEEVIRE 58
>04_03_0142 + 11773124-11774158
Length = 344
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 86 AHQWAARRGPTPSGPIGA 33
A +W ARR P P P+G+
Sbjct: 272 ARRWVARRWPPPPRPLGS 289
>02_05_1068 + 33862378-33863640
Length = 420
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 97 PPDPGAVSMTSVVRDRGLILMV 162
PP+P + ++ S++R R LIL+V
Sbjct: 90 PPEPTSANLASLLRARKLILVV 111
>07_03_0681 +
20659789-20659839,20660030-20660170,20661294-20661399,
20661625-20661806,20661888-20662113,20662198-20662624,
20662844-20663189,20663271-20663849
Length = 685
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 155 KIRPRSRTTEVIETAPGSGGSVTA 84
K+ R TT + T+P +GGSV A
Sbjct: 21 KLSVRLITTTAVPTSPSTGGSVVA 44
>06_03_0934 -
26073084-26073220,26073296-26073345,26073465-26073634,
26073651-26073803,26073877-26074032,26074227-26074350,
26075066-26075178,26076336-26076469,26077391-26077578,
26077718-26078139
Length = 548
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 74 AARRGPTPSGPIGAYRGRSARASC 3
+A G TP+GPI Y G C
Sbjct: 118 SAAAGETPAGPIFVYTGNEGDIEC 141
>02_02_0643 + 12590928-12592172,12592609-12592698
Length = 444
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 100 PDPGAVSMTSVVRDRGLILMVLR 168
P+PG V +V RG +LMV+R
Sbjct: 256 PEPGEVLARYLVESRGHLLMVVR 278
>08_01_0878 +
8624616-8624761,8625861-8626274,8626895-8626945,
8627179-8627215,8629535-8630059
Length = 390
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 116 TAPGSGGSVTAHQW 75
T PG GG VT +W
Sbjct: 148 TGPGDGGEVTTEEW 161
>06_01_1105 +
9102059-9102167,9103770-9103907,9104125-9104267,
9104362-9104515,9104610-9104839,9105382-9105471,
9105606-9105779,9105873-9106010,9106212-9106349,
9106450-9106511,9106744-9106972,9108531-9109364
Length = 812
Score = 25.0 bits (52), Expect = 8.6
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 9/44 (20%)
Frame = -2
Query: 107 GSGGSVTAHQWAA--------RRGPTPSGPIGAYRG-RSARASC 3
G GG+ T+ W RR P PS P+G RG R R C
Sbjct: 765 GRGGAATSFLWRRPVAEPGRRRRSPPPS-PVGVSRGRRGMRKGC 807
>03_03_0164 - 14979364-14979479,14979613-14980102
Length = 201
Score = 25.0 bits (52), Expect = 8.6
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = -2
Query: 167 RRTIKIRPRSRTTEVIETAPGSGGSVTAHQWAARRGPTPSGPIGAYRGR 21
RR + R R + E + G G QW RRG G RGR
Sbjct: 37 RRGQRRRGRGQRRERRGSGVGGGNGKARGQWQQRRGGGVGSGNGEARGR 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,607,539
Number of Sequences: 37544
Number of extensions: 79079
Number of successful extensions: 357
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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