Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C17
         (231 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   3.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   8.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    19   8.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    19   8.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    19   8.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 3.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 65 RGPTPSGPIGA 33
          +GP P GP GA
Sbjct: 44 QGPPPGGPPGA 54


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 85  AVTDPPDPGAVSMTS 129
           A  DPP+P   ++TS
Sbjct: 176 ASMDPPEPPVPTVTS 190


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 92  VTAHQWAARRGPTP 51
           +  HQ   R GPTP
Sbjct: 245 LAGHQGNFRAGPTP 258


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 92  VTAHQWAARRGPTP 51
           +  HQ   R GPTP
Sbjct: 160 LAGHQGNFRAGPTP 173


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 92  VTAHQWAARRGPTP 51
           +  HQ   R GPTP
Sbjct: 479 LAGHQGNFRAGPTP 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,386
Number of Sequences: 438
Number of extensions: 790
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3785850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)