Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C16
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   167   6e-43
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    90   2e-19
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    89   4e-19
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    72   4e-14
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    47   1e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    44   1e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    38   6e-04
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    27   1.5  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    26   2.6  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   6.1  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    25   6.1  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   6.1  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   8.0  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    25   8.0  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  167 bits (407), Expect = 6e-43
 Identities = 74/79 (93%), Positives = 76/79 (96%)
 Frame = +3

Query: 111 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 290
           +MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 43  IMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP 102

Query: 291 VLLTEAPLKPKANREKMTQ 347
            LLTEAPL PK+NREKMTQ
Sbjct: 103 CLLTEAPLNPKSNREKMTQ 121



 Score = 34.3 bits (75), Expect = 0.010
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = +2

Query: 437 TLYASGRTTGIVLDSG 484
           +LYASGRTTGIVLDSG
Sbjct: 141 SLYASGRTTGIVLDSG 156



 Score = 29.1 bits (62), Expect = 0.37
 Identities = 16/26 (61%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +1

Query: 10 SALVV-TWVGMCKR-FRGNDAPRAVF 81
          +ALV+    GMCK  F G+DAPRAVF
Sbjct: 6  AALVIDNGSGMCKAGFAGDDAPRAVF 31


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 89.8 bits (213), Expect = 2e-19
 Identities = 38/81 (46%), Positives = 59/81 (72%), Gaps = 4/81 (4%)
 Frame = +3

Query: 132 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 311
           KD  VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P    +LLTE P
Sbjct: 50  KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109

Query: 312 LKPKANREKMTQT----YGFG 362
           + P ANREKM +T    YGFG
Sbjct: 110 MNPVANREKMCETMFERYGFG 130



 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 437 TLYASGRTTGIVLDSG 484
           +LYA G ++G+V+DSG
Sbjct: 141 SLYAQGLSSGVVVDSG 156


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 88.6 bits (210), Expect = 4e-19
 Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
 Frame = +3

Query: 105 QXVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPE 281
           + VM    QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L   PE
Sbjct: 45  ERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPE 104

Query: 282 EHPVLLTEAPLKPKANREKMTQTY 353
           EHP+LLTE PL    N+EK+ + +
Sbjct: 105 EHPLLLTEPPLANIRNKEKIAEYF 128



 Score = 27.9 bits (59), Expect = 0.86
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +2

Query: 440 LYASGRTTGIVLDSG 484
           LYAS RTTGIVL+ G
Sbjct: 147 LYASARTTGIVLECG 161


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 72.1 bits (169), Expect = 4e-14
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = +3

Query: 135 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 311
           D ++G++A  K     +L YPI HG + NWD ME+ W  + +  LR  PE+H  LLTE P
Sbjct: 73  DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132

Query: 312 LKPKANREKMTQ 347
           L P  NRE   +
Sbjct: 133 LNPPENRENTAE 144


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = +3

Query: 177 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLKPKANREKMTQT 350
           + +K  I +G V NWD    +W +    +L+  P EHP+L+TE    P  NR K  +T
Sbjct: 63  MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = +3

Query: 123 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 299
           + +  + VG++   + G  ++ + P E  +++NWD ME++  +TF  +L +   EHP+ +
Sbjct: 62  LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120

Query: 300 TEAPLKPKANREKMTQ 347
           TE    P   R  MT+
Sbjct: 121 TEPLANPTYVRSTMTE 136


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 38.3 bits (85), Expect = 6e-04
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = +3

Query: 132 KDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 305
           ++ YV DE Q    I  + +K    +GI+ +W+     W      +L+V P E+ +++TE
Sbjct: 49  RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108

Query: 306 APLKPKANREKMTQ 347
               P++ R+++ +
Sbjct: 109 PSWNPQSVRQQIME 122


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +3

Query: 192 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLKPKANREKMTQTY 353
           PI+ G V +W+ ++  W H  Y+ L   P +    +PV L         +RE  TQ +
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFF 169


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 99  SSQXVMVGMGQKDSYVGDEAQSKRGILTLKYPI 197
           S   +M+G     +Y+G  AQ KR +LT +  I
Sbjct: 161 SQYAIMIGAIHGFAYIGLAAQGKRALLTARVTI 193


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 252  FYNELRVAPEEHPVLLTE--APLKPKANREKMTQTYGFGRN 368
            +Y  L    E+HP+LLT+  A L P+ +  ++ + +    N
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSEN 1439


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 173 YPHTQIPHRTRHRHQLGRYGEDLASHLLQ*AACSSRG 283
           Y + + PH+ +H   LG YG    ++ L    C  +G
Sbjct: 307 YGNPEHPHQRKHAFDLGEYGAGYLTNPLA-LGCDCKG 342


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 288 GAPRELHAAHCRRCDARSSP 229
           G PRE    HCR C+    P
Sbjct: 52  GIPRESTVNHCRECERYMQP 71


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 486 SPESSTIPVVRPDAYSVEPPALGYALP 406
           SPE +  PV + +  + +PPA+  + P
Sbjct: 462 SPEENNTPVTKKEVETSKPPAVSGSTP 488


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 96  RPTIEEYGAGSVVPAKPLAHSDPCYD 19
           R  IE +    ++P KPLA +  C++
Sbjct: 137 RARIEAFQPPPIIPQKPLASTPQCHE 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,785
Number of Sequences: 5004
Number of extensions: 49434
Number of successful extensions: 133
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)