Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_C15
(329 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 66 1e-12
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 65 2e-12
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 65 3e-12
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce... 28 0.42
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 27 0.97
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 27 0.97
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 25 3.0
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 25 3.9
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo... 24 6.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 23 9.0
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 66.5 bits (155), Expect = 1e-12
Identities = 43/90 (47%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Frame = +2
Query: 74 PPGLDGSHKLRECLRYDL-LRNRSSTA---HGMSA*L*SNVSSKWTGKCGLTHV-PGGIM 238
P G HK RECL + LRNR A + A L + K GK P G M
Sbjct: 29 PKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLI-KVDGKVRTDSTFPTGFM 87
Query: 239 DVVSIEKTNELFRLIYDVKGRFTIHRITPE 328
DV+S+EKT E FRL+YD+KGRFT+HRIT E
Sbjct: 88 DVISVEKTGEHFRLVYDIKGRFTVHRITAE 117
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 65.3 bits (152), Expect = 2e-12
Identities = 42/90 (46%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Frame = +2
Query: 74 PPGLDGSHKLRECLRYDL-LRNRSSTA---HGMSA*L*SNVSSKWTGKCGLTHV-PGGIM 238
P G HK RECL + LRNR A + A L + K GK P G M
Sbjct: 29 PKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLI-KVDGKVRTDSTFPTGFM 87
Query: 239 DVVSIEKTNELFRLIYDVKGRFTIHRITPE 328
DV+S++KT E FRL+YD+KGRFT+HRIT E
Sbjct: 88 DVISVDKTGEHFRLVYDIKGRFTVHRITAE 117
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 64.9 bits (151), Expect = 3e-12
Identities = 42/90 (46%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Frame = +2
Query: 74 PPGLDGSHKLRECLRYDL-LRNRSSTA---HGMSA*L*SNVSSKWTGKCGLTHV-PGGIM 238
P G HK RECL + LRNR A + A L + GK P G M
Sbjct: 29 PKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQV-DGKVRTDSTFPTGFM 87
Query: 239 DVVSIEKTNELFRLIYDVKGRFTIHRITPE 328
DV+S+EKT E FRL+YD+KGRFT+HRIT E
Sbjct: 88 DVISVEKTGEHFRLVYDIKGRFTVHRITAE 117
>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 418
Score = 27.9 bits (59), Expect = 0.42
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 72 VRRASTGPTSCANACAMIFCEIGQVP 149
VRR G S NAC + + + GQ+P
Sbjct: 385 VRRGPEGNKSLCNACGVAYAKTGQLP 410
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 26.6 bits (56), Expect = 0.97
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 105 ANACAMIFCEIGQVPLTA*VLNCEATSHQSGRES 206
A +C++I I P VLNC AT+++ E+
Sbjct: 3 AESCSLILSYISSAPAGNLVLNCTATTNKQTLEA 36
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 0.97
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 176 FTIKHSCRERYLTDFAEDHSASIRA 102
F+ S RE+Y TD AED IRA
Sbjct: 88 FSAAGSIREKYNTDIAEDLRQKIRA 112
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.0 bits (52), Expect = 3.0
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -1
Query: 143 LTDFAEDHSASIRAACGTRRGPADTRQLSTSMLRGLTLKFSRHLSP 6
L D A D + TRR D+R+ L G+ + R +SP
Sbjct: 131 LMDNAMDELEELSTLAKTRRNDRDSRRDERHYLNGIRERRERSISP 176
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 24.6 bits (51), Expect = 3.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 128 EDHSASIRAACGTRRGPADTRQLS 57
ED S S+R++CG R P+ L+
Sbjct: 277 EDISNSVRSSCGKRLSPSSNFDLN 300
>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
Agn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 23.8 bits (49), Expect = 6.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 13 RWRENLSVKPLSMDVDSW 66
RW E LSV+P ++V +W
Sbjct: 240 RWNEMLSVQPDMIEVLTW 257
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 239 DVVSIEKTNELFRLIYDV 292
+V S+EK N++F + Y+V
Sbjct: 1718 NVSSLEKCNQIFSIFYEV 1735
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,448
Number of Sequences: 5004
Number of extensions: 25023
Number of successful extensions: 68
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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