Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_C15
(329 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 58 1e-09
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 52 1e-07
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 52 1e-07
01_01_0220 + 1866989-1868393,1868465-1869153 28 1.5
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 28 2.0
01_07_0140 - 41387166-41388488 27 2.7
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 27 4.7
09_03_0029 + 11724581-11724583,11726413-11726610,11726874-117270... 26 6.2
08_02_0243 - 14708055-14708416,14708487-14709324,14709482-147103... 26 6.2
08_02_1239 + 25491034-25492378,25493719-25494575 26 8.3
02_05_0864 - 32319266-32319517,32320139-32320767,32321106-323211... 26 8.3
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 58.4 bits (135), Expect = 1e-09
Identities = 45/105 (42%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Frame = +2
Query: 38 SP*AWMWTA-GGC--PPGLDGSHKLRECLRYDL-LRNRSSTA----HGMSA*L*SNVSSK 193
+P WM GG P G HK RECL L LRNR A +S + +V
Sbjct: 30 APSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQRHVMVD 89
Query: 194 WTGKCGLTHVPGGIMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 328
+ T+ P G MDVVSI KT E FRL+YD KGRF +H I E
Sbjct: 90 GKVRTDKTY-PAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDE 133
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 51.6 bits (118), Expect = 1e-07
Identities = 40/105 (38%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Frame = +2
Query: 38 SP*AWMWTA-GGC--PPGLDGSHKLRECLRYDLL-RNRSSTA----HGMSA*L*SNVSSK 193
+P WM GG P G HK RECL L+ RNR A +S + +V
Sbjct: 14 APKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVD 73
Query: 194 WTGKCGLTHVPGGIMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 328
+ T+ P G MDV+SI KT E +RL+YD KGRF + + E
Sbjct: 74 GKVRTDKTY-PAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDE 117
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 51.6 bits (118), Expect = 1e-07
Identities = 40/105 (38%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Frame = +2
Query: 38 SP*AWMWTA-GGC--PPGLDGSHKLRECLRYDLL-RNRSSTA----HGMSA*L*SNVSSK 193
+P WM GG P G HK RECL L+ RNR A +S + +V
Sbjct: 14 APKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVD 73
Query: 194 WTGKCGLTHVPGGIMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 328
+ T+ P G MDV+SI KT E +RL+YD KGRF + + E
Sbjct: 74 GKVRTDKTY-PAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDE 117
>01_01_0220 + 1866989-1868393,1868465-1869153
Length = 697
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 66 AGVRRASTGPTSCANACAMIFCEIGQVPLTA*VLNCEATSHQSGRESA 209
AG + G SCA A++ + V L A +L C SGR SA
Sbjct: 278 AGAATSGKGKMSCAAVVAIVAGDFAVVGLVAGLLFCYFWPRLSGRRSA 325
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -1
Query: 146 YLTDFAEDHSASIRAACGTRRGP----ADTRQLSTSMLRGLTLKFSRHLSPG 3
+LT +DH+ + AA G R GP T +L + G+ R L+PG
Sbjct: 19 FLTHLHQDHTRGLGAAGGWRHGPLYCSPVTARLLPTRFPGVDASLLRPLAPG 70
>01_07_0140 - 41387166-41388488
Length = 440
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +1
Query: 61 SWR---VSAGPRRVPQAARMLAL*SSAKSVKYRSRH 159
SWR +AGPR + ++AL S A +V + SRH
Sbjct: 44 SWRRAASAAGPRLSRHSLHLVALCSGANAVDFSSRH 79
>02_02_0011 +
6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = +2
Query: 134 NRSSTAHGMSA*L*SNVSSKWTGKCGLTHVPGGIMDVVSIEKTNEL-----FRLIYDVKG 298
NR ST H M+ L S W G LT + +VV+I K+ E +R ++KG
Sbjct: 664 NRDSTVHNMATTLPMIRESIWEGAIQLT--MSSLTNVVAIFKSGEKPPVKEWRSFVEIKG 721
Query: 299 R 301
R
Sbjct: 722 R 722
>09_03_0029 +
11724581-11724583,11726413-11726610,11726874-11727038,
11727217-11727283,11727645-11727812,11728070-11728194,
11728288-11728446,11728552-11728714,11728795-11728920,
11729000-11729083,11729161-11729528,11729613-11729813,
11729909-11730018,11730113-11730197,11730360-11730488,
11730580-11730667,11730805-11730893,11730968-11731267
Length = 875
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 257 KTNELFRLIYDVKGRFTIH 313
K E+FR + D K RFT+H
Sbjct: 830 KIAEVFRAVEDAKKRFTVH 848
>08_02_0243 -
14708055-14708416,14708487-14709324,14709482-14710323,
14710466-14710520,14711535-14711549,14713030-14713033,
14713340-14713424,14714045-14714084
Length = 746
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 89 RRGPADTRQLSTSMLRGLTLKFSRHLSP 6
+RG ++ RQL M+ +LK +HL P
Sbjct: 35 KRGRSNPRQLQALMVNASSLKVLQHLQP 62
>08_02_1239 + 25491034-25492378,25493719-25494575
Length = 733
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 297 PFTSYIKRNNSFVFSMDTTSIIPPGTWVSPHFPVHFD 187
P ++I + + V S+ TTS+ P G +SP PV +D
Sbjct: 191 PDDNHIGLDVNGVVSVATTSLKPLGIEISPVDPVKYD 227
>02_05_0864 -
32319266-32319517,32320139-32320767,32321106-32321139,
32321234-32321427,32322044-32322383
Length = 482
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 143 LTDFAEDHSASIRAACGTRRGPADTRQ 63
++D AED S ++ A CGT+ P DT Q
Sbjct: 202 VSDKAEDASLAVVAFCGTK--PFDTEQ 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,018,359
Number of Sequences: 37544
Number of extensions: 186260
Number of successful extensions: 484
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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