Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_C15
(329 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D16257-1|BAA03786.1| 261|Drosophila melanogaster ribosomal prot... 64 5e-11
BT011369-1|AAR96161.1| 261|Drosophila melanogaster RE57333p pro... 63 7e-11
AE014296-2240|AAF49846.1| 261|Drosophila melanogaster CG11276-P... 63 7e-11
AE014296-2239|AAF49847.1| 261|Drosophila melanogaster CG11276-P... 63 7e-11
BT023758-1|AAZ41766.1| 775|Drosophila melanogaster RE57643p pro... 27 4.3
AE014297-4113|AAF56694.1| 775|Drosophila melanogaster CG3361-PA... 27 4.3
AY095051-1|AAM11379.1| 1838|Drosophila melanogaster LD40310p pro... 27 5.7
AE014134-1014|AAN10569.1| 1838|Drosophila melanogaster CG9088-PB... 27 5.7
AE014134-1013|AAF52319.1| 1838|Drosophila melanogaster CG9088-PA... 27 5.7
>D16257-1|BAA03786.1| 261|Drosophila melanogaster ribosomal protein
S4 protein.
Length = 261
Score = 63.7 bits (148), Expect = 5e-11
Identities = 46/105 (43%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Frame = +2
Query: 38 SP*AWMWTA-GG--CPPGLDGSHKLRECLRY-DLLRNRSSTAHGMSA*L*SNVSSKWTGK 205
+P AWM GG P G HKLRE L LRNR A A + V +
Sbjct: 14 APKAWMLDKLGGVFAPRPSTGPHKLRESLPLLTFLRNRLKYALN-GAEVTKIVMQRLVKV 72
Query: 206 CGLTHV----PGGIMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 328
G P G MDV+++EKT E FRL+YDVKGRF IHRI+ E
Sbjct: 73 YGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAE 117
>BT011369-1|AAR96161.1| 261|Drosophila melanogaster RE57333p
protein.
Length = 261
Score = 63.3 bits (147), Expect = 7e-11
Identities = 47/104 (45%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Frame = +2
Query: 38 SP*AWMWTA-GG--CPPGLDGSHKLRECLRYDL-LRNRSSTA-HGMSA*-L*SNVSSKWT 199
+P AWM GG P G HKLRE L + LRNR A +G + K
Sbjct: 14 APKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVD 73
Query: 200 GKCGLTHV-PGGIMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 328
GK P G MDV+++EKT E FRL+YDVKGRF IHRI+ E
Sbjct: 74 GKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAE 117
>AE014296-2240|AAF49846.1| 261|Drosophila melanogaster CG11276-PB,
isoform B protein.
Length = 261
Score = 63.3 bits (147), Expect = 7e-11
Identities = 47/104 (45%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Frame = +2
Query: 38 SP*AWMWTA-GG--CPPGLDGSHKLRECLRYDL-LRNRSSTA-HGMSA*-L*SNVSSKWT 199
+P AWM GG P G HKLRE L + LRNR A +G + K
Sbjct: 14 APKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVD 73
Query: 200 GKCGLTHV-PGGIMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 328
GK P G MDV+++EKT E FRL+YDVKGRF IHRI+ E
Sbjct: 74 GKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAE 117
>AE014296-2239|AAF49847.1| 261|Drosophila melanogaster CG11276-PA,
isoform A protein.
Length = 261
Score = 63.3 bits (147), Expect = 7e-11
Identities = 47/104 (45%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Frame = +2
Query: 38 SP*AWMWTA-GG--CPPGLDGSHKLRECLRYDL-LRNRSSTA-HGMSA*-L*SNVSSKWT 199
+P AWM GG P G HKLRE L + LRNR A +G + K
Sbjct: 14 APKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVD 73
Query: 200 GKCGLTHV-PGGIMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 328
GK P G MDV+++EKT E FRL+YDVKGRF IHRI+ E
Sbjct: 74 GKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAE 117
>BT023758-1|AAZ41766.1| 775|Drosophila melanogaster RE57643p
protein.
Length = 775
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 309 IVNLPFTSYIKRNNSFVFSMDTTSIIPPGTWVSPH-FPVHFDET 181
+ +LPF +K MDTT+ PP SP PV D+T
Sbjct: 307 VPHLPFIVSVKHEPDVDLGMDTTNTPPPTAPASPSPPPVTVDDT 350
>AE014297-4113|AAF56694.1| 775|Drosophila melanogaster CG3361-PA
protein.
Length = 775
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 309 IVNLPFTSYIKRNNSFVFSMDTTSIIPPGTWVSPH-FPVHFDET 181
+ +LPF +K MDTT+ PP SP PV D+T
Sbjct: 307 VPHLPFIVSVKHEPDVDLGMDTTNTPPPTAPASPSPPPVTVDDT 350
>AY095051-1|AAM11379.1| 1838|Drosophila melanogaster LD40310p
protein.
Length = 1838
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 288 SYIKRNNSFVFSMDTTSIIPPGTWVSPHFPVHFDE 184
+YI + S I+PP TW SP F V D+
Sbjct: 176 AYISKIRSIAEKCGIAKILPPATW-SPPFAVDVDK 209
>AE014134-1014|AAN10569.1| 1838|Drosophila melanogaster CG9088-PB,
isoform B protein.
Length = 1838
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 288 SYIKRNNSFVFSMDTTSIIPPGTWVSPHFPVHFDE 184
+YI + S I+PP TW SP F V D+
Sbjct: 176 AYISKIRSIAEKCGIAKILPPATW-SPPFAVDVDK 209
>AE014134-1013|AAF52319.1| 1838|Drosophila melanogaster CG9088-PA,
isoform A protein.
Length = 1838
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 288 SYIKRNNSFVFSMDTTSIIPPGTWVSPHFPVHFDE 184
+YI + S I+PP TW SP F V D+
Sbjct: 176 AYISKIRSIAEKCGIAKILPPATW-SPPFAVDVDK 209
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,353,450
Number of Sequences: 53049
Number of extensions: 305147
Number of successful extensions: 725
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 714329562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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