Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_C15
(329 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 61 2e-10
AL008868-3|CAH04724.1| 362|Caenorhabditis elegans Hypothetical ... 27 2.4
U67948-4|AAM51500.1| 688|Caenorhabditis elegans Hypothetical pr... 27 3.2
U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 26 5.5
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 26 5.5
Z92803-8|CAB07245.1| 814|Caenorhabditis elegans Hypothetical pr... 26 7.3
U50301-10|AAV28351.1| 513|Caenorhabditis elegans Hypothetical p... 26 7.3
AB077851-1|BAB83878.1| 814|Caenorhabditis elegans heparan sulfa... 26 7.3
Z66519-7|CAA91378.2| 338|Caenorhabditis elegans Hypothetical pr... 25 9.7
U22831-14|AAN84802.1| 334|Caenorhabditis elegans G-protein-link... 25 9.7
U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-link... 25 9.7
U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-link... 25 9.7
U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-link... 25 9.7
AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-lin... 25 9.7
AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-lin... 25 9.7
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 25 9.7
AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-lin... 25 9.7
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 25 9.7
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 61.3 bits (142), Expect = 2e-10
Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Frame = +2
Query: 89 GSHKLRECLRYDL-LRNRSSTA--HGMSA*L*SNVSSKWTGKCGLTH-VPGGIMDVVSIE 256
G HKLRE L L LRNR A + + + + + GK H P G MDVV+IE
Sbjct: 33 GPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIE 92
Query: 257 KTNELFRLIYDVKGRFTIHRI 319
+TNE FR++YD KGR+ +HRI
Sbjct: 93 RTNEYFRMLYDTKGRYVVHRI 113
>AL008868-3|CAH04724.1| 362|Caenorhabditis elegans Hypothetical
protein C53C7.1b protein.
Length = 362
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 158 CRERYLTDFAEDHSASIRAACGTRRG-PADTRQLST 54
C E + FA +++AACG RRG PA ++ LST
Sbjct: 310 CNEHFRAAFAALLD-TVKAACGMRRGNPACSQLLST 344
>U67948-4|AAM51500.1| 688|Caenorhabditis elegans Hypothetical
protein M02E1.1b protein.
Length = 688
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 16 WRENLSVKPLSMDVDSWRVSAGPRRVPQAARMLA 117
W+EN + P SMD W S +V + ++A
Sbjct: 129 WKENGKLPPSSMDYGDWDCSKASAKVAEQMILIA 162
>U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical
protein M02E1.1a protein.
Length = 1077
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 16 WRENLSVKPLSMDVDSWRVSAGPRRVPQAARMLA 117
W+EN + P SMD W S +V + ++A
Sbjct: 129 WKENGKLPPSSMDYGDWDCSKASAKVAEQMILIA 162
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
C10C6.1 protein.
Length = 1565
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 313 VDSEPSFHIIY*TE*LICFLNGYNVHN 233
V+ P+FH E +I +NG+ VHN
Sbjct: 1207 VEGSPAFHANLQAEDMITHVNGHPVHN 1233
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 313 VDSEPSFHIIY*TE*LICFLNGYNVHN 233
V+ P+FH E +I +NG+ VHN
Sbjct: 1207 VEGSPAFHANLQAEDMITHVNGHPVHN 1233
>Z92803-8|CAB07245.1| 814|Caenorhabditis elegans Hypothetical
protein K01G5.6 protein.
Length = 814
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 270 NSFVFSMDTTSIIPPGTWVSPHFPVHF 190
N + + + PP TW S H PV F
Sbjct: 588 NKIIVVWNNVNRDPPDTWPSLHIPVEF 614
>U50301-10|AAV28351.1| 513|Caenorhabditis elegans Hypothetical
protein F20D6.12 protein.
Length = 513
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 318 IRWIVNLPFTSYIKRNNSFVF 256
I +I+ L S++K NNSF+F
Sbjct: 32 IHYIIVLKVVSHLKENNSFLF 52
>AB077851-1|BAB83878.1| 814|Caenorhabditis elegans heparan sulfate
GlcNAc transferase-I/II protein.
Length = 814
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 270 NSFVFSMDTTSIIPPGTWVSPHFPVHF 190
N + + + PP TW S H PV F
Sbjct: 588 NKIIVVWNNVNRDPPDTWPSLHIPVEF 614
>Z66519-7|CAA91378.2| 338|Caenorhabditis elegans Hypothetical
protein B0334.7 protein.
Length = 338
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -3
Query: 321 VIRWIVNLPFTSYIKRNNSFVFSMDTTSI 235
+++ I+ P SY + +N FVFSMD +S+
Sbjct: 171 LLKVILPCPHPSYFQ-SNVFVFSMDISSV 198
>U22831-14|AAN84802.1| 334|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform e protein.
Length = 334
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 322 CDTVDSEPSFHIIY*TE*LICFLN 251
C+T + PSF+ +Y +C++N
Sbjct: 281 CETCKASPSFNTLYTISYYLCYMN 304
>U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform b protein.
Length = 614
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 322 CDTVDSEPSFHIIY*TE*LICFLN 251
C+T + PSF+ +Y +C++N
Sbjct: 561 CETCKASPSFNTLYTISYYLCYMN 584
>U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform a protein.
Length = 627
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 322 CDTVDSEPSFHIIY*TE*LICFLN 251
C+T + PSF+ +Y +C++N
Sbjct: 574 CETCKASPSFNTLYTISYYLCYMN 597
>U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform c protein.
Length = 667
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 322 CDTVDSEPSFHIIY*TE*LICFLN 251
C+T + PSF+ +Y +C++N
Sbjct: 614 CETCKASPSFNTLYTISYYLCYMN 637
>AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2b protein.
Length = 627
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 322 CDTVDSEPSFHIIY*TE*LICFLN 251
C+T + PSF+ +Y +C++N
Sbjct: 574 CETCKASPSFNTLYTISYYLCYMN 597
>AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2a protein.
Length = 664
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 322 CDTVDSEPSFHIIY*TE*LICFLN 251
C+T + PSF+ +Y +C++N
Sbjct: 611 CETCKASPSFNTLYTISYYLCYMN 634
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -3
Query: 87 SRPGGHPPAVHIH--A*GLNAQVLSPSQ 10
S GG PPA H H G+N QV S +Q
Sbjct: 1347 SMRGGFPPASHYHGGTSGVNKQVASYAQ 1374
>AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-2c protein.
Length = 614
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 322 CDTVDSEPSFHIIY*TE*LICFLN 251
C+T + PSF+ +Y +C++N
Sbjct: 561 CETCKASPSFNTLYTISYYLCYMN 584
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -3
Query: 87 SRPGGHPPAVHIH--A*GLNAQVLSPSQ 10
S GG PPA H H G+N QV S +Q
Sbjct: 1347 SMRGGFPPASHYHGGTSGVNKQVASYAQ 1374
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,127,859
Number of Sequences: 27780
Number of extensions: 152731
Number of successful extensions: 371
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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