Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C15
         (329 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   5.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   8.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 152  ERYLTDFAEDHSASIRAACG 93
            ER +   +ED+  S+R  CG
Sbjct: 1580 ERVMLKASEDYRYSVRGLCG 1599


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 211 TDPRTRRDYGRCIH 252
           T+P T R+YGR I+
Sbjct: 203 TEPYTLRNYGRRIN 216


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 179 NVSSKWTGKCGLTHVPGGIMDVVSIEKTNELF 274
           NVSS+ +   G T +    +DV S +K + L+
Sbjct: 247 NVSSRRSDMNGTTPLDEKPLDVSSNDKVHPLY 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,458
Number of Sequences: 438
Number of extensions: 1753
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)