Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_C13
(445 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 26 0.16
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 26 0.16
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 23 2.0
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 22 2.6
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 22 3.5
DQ435331-1|ABD92646.1| 135|Apis mellifera OBP14 protein. 21 4.6
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 21 6.1
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 21 6.1
AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein. 21 6.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.0
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.0
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.0
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.0
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 21 8.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.0
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.0
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 26.2 bits (55), Expect = 0.16
Identities = 27/110 (24%), Positives = 48/110 (43%)
Frame = +2
Query: 98 AIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAED 277
A+QE +R E+ + + LH M EAE V + + Y++A +
Sbjct: 179 AVQEERQRTKERDQSEVESTSSLH----SDMPIERILEAEKRVECKMEQQGNYENAVSHI 234
Query: 278 DTEFDQEDMEELAQDEHHD*IGSIPPIYEILLLKNMVNKYFIVVFHSSHR 427
+++ + +A +H S+P ++LLL+ N+ I F SHR
Sbjct: 235 CNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASF--SHR 282
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 26.2 bits (55), Expect = 0.16
Identities = 27/110 (24%), Positives = 48/110 (43%)
Frame = +2
Query: 98 AIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAED 277
A+QE +R E+ + + LH M EAE V + + Y++A +
Sbjct: 179 AVQEERQRTKERDQSEVESTSSLH----SDMPIERILEAEKRVECKMEQQGNYENAVSHI 234
Query: 278 DTEFDQEDMEELAQDEHHD*IGSIPPIYEILLLKNMVNKYFIVVFHSSHR 427
+++ + +A +H S+P ++LLL+ N+ I F SHR
Sbjct: 235 CNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASF--SHR 282
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 22.6 bits (46), Expect = 2.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +2
Query: 191 DEMEFNEAESNVNDLVSEYQQYQDATAEDDT 283
DE F+E +S + +S + +Y D+ + +T
Sbjct: 206 DERSFSEHDSVMLGEISPHHEYYDSKSSTET 236
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 22.2 bits (45), Expect = 2.6
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 228 LTLLSASLNSISSMPSPVYQCKKALR-LNIAEN 133
L +AS NS+ S+P ++ + LR +++A N
Sbjct: 263 LRTFNASYNSLDSLPEGLFASTRDLREIHLAYN 295
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 21.8 bits (44), Expect = 3.5
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -1
Query: 340 DLIMVLVLSELLHIFLVKFRVIFSGRVLVLLVFRNQIIDIALRLVEF-HLVHALAG-VPV 167
D L L E+ +I+ ++ + +SG + I++ LVEF + AG + V
Sbjct: 43 DYYQNLNLGEIYYIYNPRYPLPYSGSKCTWTITSYHRINLKCSLVEFSENKNCNAGSLTV 102
Query: 166 QESLASEHSGEL 131
+++ A+++ G +
Sbjct: 103 KKNFANKYCGNI 114
>DQ435331-1|ABD92646.1| 135|Apis mellifera OBP14 protein.
Length = 135
Score = 21.4 bits (43), Expect = 4.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 121 SLKQLLDGCGVTDECRGHLEA 59
S+KQL+ C E HL+A
Sbjct: 96 SVKQLVSDCSTISEENPHLKA 116
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 21.0 bits (42), Expect = 6.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +2
Query: 212 AESNVNDLVSEYQQYQDATAEDDTEFDQ 295
A++N+N+ Y Y DT+F Q
Sbjct: 131 AKNNINEAQYIYSLYTAVITRPDTKFIQ 158
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 21.0 bits (42), Expect = 6.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +2
Query: 212 AESNVNDLVSEYQQYQDATAEDDTEFDQ 295
A++N+N+ Y Y DT+F Q
Sbjct: 131 AKNNINEAQYIYSLYTAVITRPDTKFIQ 158
>AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein.
Length = 147
Score = 21.0 bits (42), Expect = 6.1
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 84 SVTPQPSRSCLREYQSSS 137
S PQP RS Y SSS
Sbjct: 54 SSVPQPPRSLEGSYDSSS 71
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.6 bits (41), Expect = 8.0
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 287 IPCHLQRSRPG 255
+PC L+ SRPG
Sbjct: 303 LPCLLRMSRPG 313
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.6 bits (41), Expect = 8.0
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 287 IPCHLQRSRPG 255
+PC L+ SRPG
Sbjct: 303 LPCLLRMSRPG 313
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.6 bits (41), Expect = 8.0
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 287 IPCHLQRSRPG 255
+PC L+ SRPG
Sbjct: 303 LPCLLRMSRPG 313
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.6 bits (41), Expect = 8.0
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 287 IPCHLQRSRPG 255
+PC L+ SRPG
Sbjct: 303 LPCLLRMSRPG 313
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.6 bits (41), Expect = 8.0
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 287 IPCHLQRSRPG 255
+PC L+ SRPG
Sbjct: 303 LPCLLRMSRPG 313
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.6 bits (41), Expect = 8.0
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 287 IPCHLQRSRPG 255
+PC L+ SRPG
Sbjct: 303 LPCLLRMSRPG 313
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 20.6 bits (41), Expect = 8.0
Identities = 7/28 (25%), Positives = 16/28 (57%)
Frame = +2
Query: 356 IYEILLLKNMVNKYFIVVFHSSHRWMPS 439
IY++ ++ ++ + V H+ WMP+
Sbjct: 790 IYKVGNVQAYIDGNVVFVCHNGMNWMPT 817
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 8.0
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 287 IPCHLQRSRPG 255
+PC L+ SRPG
Sbjct: 371 LPCLLRMSRPG 381
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 8.0
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 287 IPCHLQRSRPG 255
+PC L+ SRPG
Sbjct: 371 LPCLLRMSRPG 381
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,411
Number of Sequences: 438
Number of extensions: 2763
Number of successful extensions: 20
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -