Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C12
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...   270   6e-74
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...   270   6e-74
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...   270   6e-74
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    78   7e-16
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    71   1e-13
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    64   2e-11
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    31   0.10 
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   2.9  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    26   3.8  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    26   3.8  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   5.0  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   8.7  
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    25   8.7  
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    25   8.7  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   8.7  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score =  270 bits (663), Expect = 6e-74
 Identities = 119/167 (71%), Positives = 143/167 (85%)
 Frame = +1

Query: 10  ESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKA 189
           ++RFEEI KE S++IKK+G+NP  V FVP+SG+ GDNM+EP+T MPW++GW  E K G  
Sbjct: 162 QARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVV 221

Query: 190 EGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPA 369
           +GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAPA
Sbjct: 222 KGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPA 281

Query: 370 NITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 510
            +TTEVKSVEMHHE+L   +PGDNVGFNVKNVSVK++RRG V GDSK
Sbjct: 282 GVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSK 328


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score =  270 bits (663), Expect = 6e-74
 Identities = 119/167 (71%), Positives = 143/167 (85%)
 Frame = +1

Query: 10  ESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKA 189
           ++RFEEI KE S++IKK+G+NP  V FVP+SG+ GDNM+EP+T MPW++GW  E K G  
Sbjct: 162 QARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVV 221

Query: 190 EGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPA 369
           +GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAPA
Sbjct: 222 KGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPA 281

Query: 370 NITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 510
            +TTEVKSVEMHHE+L   +PGDNVGFNVKNVSVK++RRG V GDSK
Sbjct: 282 GVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSK 328


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score =  270 bits (663), Expect = 6e-74
 Identities = 119/167 (71%), Positives = 143/167 (85%)
 Frame = +1

Query: 10  ESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKA 189
           ++RFEEI KE S++IKK+G+NP  V FVP+SG+ GDNM+EP+T MPW++GW  E K G  
Sbjct: 162 QARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVV 221

Query: 190 EGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPA 369
           +GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAPA
Sbjct: 222 KGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPA 281

Query: 370 NITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 510
            +TTEVKSVEMHHE+L   +PGDNVGFNVKNVSVK++RRG V GDSK
Sbjct: 282 GVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSK 328


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 78.2 bits (184), Expect = 7e-16
 Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 4/164 (2%)
 Frame = +1

Query: 10  ESRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNMLEPSTK--MPWFKGWLVERKE 180
           E RF+EIK  VS + IK +G+  + V FVPIS   G N+++  +     W+KG       
Sbjct: 332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG------- 384

Query: 181 GKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVF 360
                  L+ ALD ++PP +P  K LRL + DVY+     TV  GRVE G ++   V+  
Sbjct: 385 -----PTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVLYD 438

Query: 361 APANITTEVKSVEMHHEALQE-AVPGDNVGFNVKNVSVKELRRG 489
             +     VK+V  + +     AV GD V   + ++ V +LR G
Sbjct: 439 VSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPG 482


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 70.5 bits (165), Expect = 1e-13
 Identities = 38/101 (37%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
 Frame = +1

Query: 202 LIEALDAILP-PARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGT--VVVFAPAN 372
           L+EA+D+ +  P R TD    + ++DV+ I G GTV  GRVE G LK G    +V   ++
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSH 293

Query: 373 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 495
           + T V  +EM  + L  AV GDN G  ++++  ++L+RG +
Sbjct: 294 LKTTVTGIEMFKKQLDAAVAGDNCGLLLRSIKREQLKRGMI 334


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 45/172 (26%), Positives = 87/172 (50%), Gaps = 5/172 (2%)
 Frame = +1

Query: 10  ESRFEEIKKEVSSYIKKI-GYNPAA-VAFVPISGWHGDNMLE--PSTKMPWFKGWLVERK 177
           E R++E   ++S +++++ GYN    V ++P+S + G N+ +   S+  PW+        
Sbjct: 395 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWY-------- 446

Query: 178 EGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVV 357
               +G  L+E LD++    R  +    +P+   YK   +GT+  G++E G +K  + V+
Sbjct: 447 ----QGPSLLEYLDSMTHLERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVL 500

Query: 358 FAPANITTEVKSV-EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 510
             P N T EV ++ +   E +  ++ GD V   V+     +++ GYV   +K
Sbjct: 501 VMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTSTK 551


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = -3

Query: 479 NSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTV 300
           N+ + +  T+  + +   ASC  S  + +  +SVV+ +  +T TV  +   VST  TGTV
Sbjct: 57  NTTSASVQTIAISQTDNAASCIPSASLLS--SSVVLYSAKETVTVSSYWSLVSTSVTGTV 114

Query: 299 PIPPILYTSC 270
            +P     +C
Sbjct: 115 YVPYTSSVAC 124


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = -2

Query: 282  VYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSLEPWHFGGRLQHVI 115
            V++ Q  + S++ G +   + V  LNKAF+ S + F +   S  P HF  ++ +V+
Sbjct: 1522 VWLSQAYSPSVLQGTT---ENVAFLNKAFSASANLFDVLPVSNTPSHF-SKMDYVL 1573


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 398 STDLTSVVMLAGAKTTTVPGFRIPVSTLPTGT--VPIPPIL 282
           ++DLT+   L    +T+   + +  +  PT T  +PIP +L
Sbjct: 615 NSDLTNSSTLLSPTSTSFTSYTVSATATPTSTSHIPIPTVL 655


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 35  RKSLPTSRKLVTIRLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKE 184
           R+S   S +   + LPS   PF++ + +   ++P    G +      KKE
Sbjct: 639 RRSFKPSEEAAKLSLPSRKNPFVSDSAVLKVNKPEMKEGQKKAEARKKKE 688


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +1

Query: 1   ARGESRFEEIKKEVS---SYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 159
           A G+       KEVS   SYI     +P        +G+  +N+++P +  P FKG
Sbjct: 148 ASGKMEKNNSFKEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKG 203


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 160 WLVERKEGKAEGKCLIEALDAILPPARPTDKALRLP 267
           +L+  +  K  G    E++DA+LP    +  +L +P
Sbjct: 628 YLLSSENAKDTGDIKSESIDAVLPTLETSSPSLSIP 663


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 263 FPCKTYTKSAVLEQYPW 313
           FPCK    S  L QYP+
Sbjct: 173 FPCKASAHSVPLSQYPY 189


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 330 YPKAWYCCRFCPC*HH 377
           YPK   CC+FC   HH
Sbjct: 147 YPKGG-CCKFCSSVHH 161


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
 Frame = -2

Query: 402 HFHGLDFSSDVSRGKNDNSTRL*DTSFNSTHGYCSNTADFVYVLQG-----KTESLVSGA 238
           ++H  D+ ++++   N ++T++   ++N       + A      Q      +T  L S +
Sbjct: 261 NYHLFDYYNEIASSPNPSTTKI---TYNPPKLPMKDFATLPIGYQSTCDSDETSELSSTS 317

Query: 237 SRRKDGVEGLNKAFTFSLSFFTLNQPSLEPWHFG 136
           S +   VEGLN       S    N PS +  HFG
Sbjct: 318 SEQTSDVEGLNAYNNLGASSDIENAPSSQ-LHFG 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,634
Number of Sequences: 5004
Number of extensions: 48557
Number of successful extensions: 139
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)