Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C11
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    29   0.31 
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    26   3.8  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    26   3.8  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   6.7  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   6.7  
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    25   8.9  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   8.9  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    25   8.9  

>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = +1

Query: 280 VNKRIQQCTITRTMPTQPMATIT-----KASPMAMVIPHKLTYQINRHRDMHHLTRDSPF 444
           V  R+Q  +I++   TQP+++       + +P  +  P    YQI RH  +  L R    
Sbjct: 48  VKTRLQSESISQYSSTQPISSAKILGKGRPAPKPLGGPVSGLYQIARHEGVRSLWRGLVP 107

Query: 445 RLTRLTPSNRLK 480
            LT L P+N ++
Sbjct: 108 SLTMLLPANTVQ 119


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 378 PQAYVPNQSPQGYASPYSGQSVQTYPTNPQQSPQNYQANITL 503
           PQ Y  N+ P+  +     +S+   P +P    +NY  N+TL
Sbjct: 266 PQLYDFNR-PESLSGQLDDESLARMPYSPNAVSRNYAMNMTL 306


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 313  RTMPTQPMATITKASPMAMVIPHKLTYQI--NRHRD 414
            +T+ T P ATITK + ++  I  + T Q+   RH D
Sbjct: 1312 KTIITMPPATITKKTSLSHTITEEKTAQLLAGRHDD 1347


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 76  EKIMAYS*HKVFRGSXWISLSLSLV 2
           EK++AYS  + ++   WI  ++S+V
Sbjct: 363 EKVIAYSKLRFYKNGSWIKSTVSVV 387


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +3

Query: 375 SPQ-AYVPNQSPQGYASPYSGQSV--QTYPTNPQQSPQNYQA 491
           +PQ A+ PN  PQG     S QS+  Q  P+  QQ PQ   A
Sbjct: 292 APQNAFFPN--PQGNVGAQSLQSMSPQDQPSTQQQQPQRTAA 331


>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/38 (28%), Positives = 13/38 (34%)
 Frame = +3

Query: 372 HSPQAYVPNQSPQGYASPYSGQSVQTYPTNPQQSPQNY 485
           +  + Y P    Q Y  P      Q YP      PQ Y
Sbjct: 7   YGDKGYAPAPPQQAYGGPNYYPPQQNYPQQGYAPPQGY 44


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 435 VPSKVMHIPVAIDLVRKLVGNDHCHRTG 352
           VP  V H P+   L+  + G+ HC + G
Sbjct: 135 VPDMVCHDPMCDKLLNFINGHIHCRKCG 162


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 164 VGWSGFRTQKCIQTKNRGSKERIFKSIGC 250
           + W G     C+ T  R  KER+F S  C
Sbjct: 244 IPWRGRLGYACLNTILRSMKERVFCSRTC 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,561
Number of Sequences: 5004
Number of extensions: 39768
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)