Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C11
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175...    28   3.9  
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680...    28   5.1  
10_08_0906 - 21472490-21472732,21472947-21473271,21473351-214735...    27   6.8  
08_01_1003 + 10174556-10174951                                         27   8.9  
07_03_1786 - 29507906-29508898                                         27   8.9  

>07_03_0982 +
           23116343-23117089,23117227-23117313,23117424-23117555,
           23118135-23118269,23118644-23118709,23118797-23118907,
           23119237-23119329,23119555-23119659,23119752-23119829
          Length = 517

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +3

Query: 375 SPQAYVPNQSPQGYASPYSGQSVQTYPTNPQQSPQNY 485
           S  +Y P     GYA PY+  +   YP     +P  Y
Sbjct: 63  SAPSYAPPPQYAGYAPPYNNPNPAPYPPESSPAPAPY 99


>02_03_0172 +
           15965342-15965711,15967757-15967849,15967976-15968060,
           15968749-15968824,15968992-15969120,15969473-15969571,
           15969661-15969762,15970257-15970415,15970507-15970602,
           15971497-15971647,15971782-15971893,15972004-15972074,
           15972548-15972984,15973421-15973492,15973713-15973810,
           15974350-15974425,15975512-15975634,15975776-15975844
          Length = 805

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -2

Query: 444 ERTVPSKVMHIPVAIDLVRKLVGNDHCHRTGL-GNSCHRLS 325
           ERT  + +  +   ++L++K   +D+CHR G  GNS +R S
Sbjct: 471 ERT--NSLARLEARLNLMQKKYWSDNCHRIGYGGNSANRKS 509


>10_08_0906 -
           21472490-21472732,21472947-21473271,21473351-21473598,
           21473823-21474071
          Length = 354

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 372 HSPQAYV-PNQSPQGYASPYSGQSVQTYPTNPQQSPQNYQANITLAS 509
           H P+ Y+ P  S +   S Y G+++     N   SPQ+ +  + L S
Sbjct: 28  HIPERYIRPEASSEEVISNYHGEAIPIIDLNKLLSPQSSEECVKLRS 74


>08_01_1003 + 10174556-10174951
          Length = 131

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 350 RPVLWQWSFPTSLRTKSIATG 412
           RP+ W W     L T+++ATG
Sbjct: 80  RPMAWSWGMEGCLHTEAMATG 100


>07_03_1786 - 29507906-29508898
          Length = 330

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 68  YFFREHAXAC-N*SEQNPXCXALGEVSKNCRF 160
           YF +  A A    SE  P   A GEV K+CRF
Sbjct: 295 YFHQRFAAALLTMSENAPLTGAQGEVRKDCRF 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,732,311
Number of Sequences: 37544
Number of extensions: 266829
Number of successful extensions: 687
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)