Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_C11
(517 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT015304-1|AAT94532.1| 753|Drosophila melanogaster AT16988p pro... 31 0.70
BT011403-1|AAR96195.1| 195|Drosophila melanogaster AT23628p pro... 31 0.70
AE013599-447|AAF59232.1| 713|Drosophila melanogaster CG2137-PA ... 31 0.70
AE014134-1234|ABI31296.1| 763|Drosophila melanogaster CG13778-P... 31 1.2
AE014134-1233|AAF52480.3| 763|Drosophila melanogaster CG13778-P... 31 1.2
AB040816-1|BAA94341.1| 751|Drosophila melanogaster menin protein. 31 1.2
AE014135-147|AAS64612.1| 1579|Drosophila melanogaster CG11148-PC... 30 2.1
AE014135-146|AAS64611.1| 1579|Drosophila melanogaster CG11148-PB... 30 2.1
AE014135-145|AAF59406.2| 1572|Drosophila melanogaster CG11148-PA... 30 2.1
X63672-1|CAA45211.1| 1589|Drosophila melanogaster polyhomeotic p... 29 4.9
BT016124-1|AAV37009.1| 1346|Drosophila melanogaster LD01444p pro... 29 4.9
AE014298-338|AAF45727.3| 1589|Drosophila melanogaster CG18412-PA... 29 4.9
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me... 28 8.6
M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase... 28 8.6
BT001593-1|AAN71348.1| 750|Drosophila melanogaster RE27538p pro... 28 8.6
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro... 28 8.6
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA... 28 8.6
AE014296-790|AAF47859.2| 750|Drosophila melanogaster CG15005-PA... 28 8.6
>BT015304-1|AAT94532.1| 753|Drosophila melanogaster AT16988p
protein.
Length = 753
Score = 31.5 bits (68), Expect = 0.70
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 256 ELAWYRRAVNKRIQQCTITRTMPTQPMATITKASPMAMVIPHKLT 390
EL W R + K+I+Q TRT M +TK S M IP K++
Sbjct: 602 ELNWSRDQIKKQIRQ---TRTFLNSQMGQLTKESASQMSIPIKMS 643
>BT011403-1|AAR96195.1| 195|Drosophila melanogaster AT23628p
protein.
Length = 195
Score = 31.5 bits (68), Expect = 0.70
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 256 ELAWYRRAVNKRIQQCTITRTMPTQPMATITKASPMAMVIPHKLT 390
EL W R + K+I+Q TRT M +TK S M IP K++
Sbjct: 44 ELNWSRDQIKKQIRQ---TRTFLNSQMGQLTKESASQMSIPIKMS 85
>AE013599-447|AAF59232.1| 713|Drosophila melanogaster CG2137-PA
protein.
Length = 713
Score = 31.5 bits (68), Expect = 0.70
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 256 ELAWYRRAVNKRIQQCTITRTMPTQPMATITKASPMAMVIPHKLT 390
EL W R + K+I+Q TRT M +TK S M IP K++
Sbjct: 562 ELNWSRDQIKKQIRQ---TRTFLNSQMGQLTKESASQMSIPIKMS 603
>AE014134-1234|ABI31296.1| 763|Drosophila melanogaster CG13778-PC,
isoform C protein.
Length = 763
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +3
Query: 276 GGEQENPTMYNHSNNANS 329
GGE +NP ++N++NN+NS
Sbjct: 557 GGESDNPELHNNNNNSNS 574
>AE014134-1233|AAF52480.3| 763|Drosophila melanogaster CG13778-PA,
isoform A protein.
Length = 763
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +3
Query: 276 GGEQENPTMYNHSNNANS 329
GGE +NP ++N++NN+NS
Sbjct: 557 GGESDNPELHNNNNNSNS 574
>AB040816-1|BAA94341.1| 751|Drosophila melanogaster menin protein.
Length = 751
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +3
Query: 276 GGEQENPTMYNHSNNANS 329
GGE +NP ++N++NN+NS
Sbjct: 545 GGESDNPELHNNNNNSNS 562
>AE014135-147|AAS64612.1| 1579|Drosophila melanogaster CG11148-PC,
isoform C protein.
Length = 1579
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 316 TMPTQPMATITKASPMAMVIPHKLTYQINRHRDMHHL 426
TMP Q TIT +P + + ++ +H +MHHL
Sbjct: 513 TMPIQITPTITDVAPPSHAVVSFSDHETMQHHNMHHL 549
>AE014135-146|AAS64611.1| 1579|Drosophila melanogaster CG11148-PB,
isoform B protein.
Length = 1579
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 316 TMPTQPMATITKASPMAMVIPHKLTYQINRHRDMHHL 426
TMP Q TIT +P + + ++ +H +MHHL
Sbjct: 513 TMPIQITPTITDVAPPSHAVVSFSDHETMQHHNMHHL 549
>AE014135-145|AAF59406.2| 1572|Drosophila melanogaster CG11148-PA,
isoform A protein.
Length = 1572
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 316 TMPTQPMATITKASPMAMVIPHKLTYQINRHRDMHHL 426
TMP Q TIT +P + + ++ +H +MHHL
Sbjct: 506 TMPIQITPTITDVAPPSHAVVSFSDHETMQHHNMHHL 542
>X63672-1|CAA45211.1| 1589|Drosophila melanogaster polyhomeotic
protein.
Length = 1589
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 292 IQQCTITRTMPTQPMATITKASPMAMVIPHKLTYQIN 402
I CT T T T ++ +K P AM+ P+ LT+ I+
Sbjct: 1275 ITSCTSTTTTTTSSISNGSKDLPKAMIKPNVLTHVID 1311
>BT016124-1|AAV37009.1| 1346|Drosophila melanogaster LD01444p protein.
Length = 1346
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 292 IQQCTITRTMPTQPMATITKASPMAMVIPHKLTYQIN 402
I CT T T T ++ +K P AM+ P+ LT+ I+
Sbjct: 1032 ITSCTSTTTTTTSSISNGSKDLPKAMIKPNVLTHVID 1068
>AE014298-338|AAF45727.3| 1589|Drosophila melanogaster CG18412-PA
protein.
Length = 1589
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 292 IQQCTITRTMPTQPMATITKASPMAMVIPHKLTYQIN 402
I CT T T T ++ +K P AM+ P+ LT+ I+
Sbjct: 1275 ITSCTSTTTTTTSSISNGSKDLPKAMIKPNVLTHVID 1311
>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
D.melanogaster RpII215gene encoding RNA polymerase II,
largest subunit, completecds. ).
Length = 1896
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 375 SPQAYVPNQSPQGYASP-YSGQSVQTYPTNPQQSPQN 482
SPQ Y P ASP YS S P++PQ SP N
Sbjct: 1776 SPQ-YTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSN 1811
>M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase II
largest subunit protein.
Length = 408
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 375 SPQAYVPNQSPQGYASP-YSGQSVQTYPTNPQQSPQN 482
SPQ Y P ASP YS S P++PQ SP N
Sbjct: 295 SPQ-YTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSN 330
>BT001593-1|AAN71348.1| 750|Drosophila melanogaster RE27538p
protein.
Length = 750
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 372 HSPQAYVPNQSPQGYASPYSGQSVQTYPTNPQQSPQNY 485
H +Y +Q P+ + S Y TY PQ P NY
Sbjct: 394 HPSSSY--DQPPEEHPSSYQHPPTSTYDQAPQHPPSNY 429
>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
Length = 1429
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 375 SPQAYVPNQSPQGYASP-YSGQSVQTYPTNPQQSPQN 482
SPQ Y P ASP YS S P++PQ SP N
Sbjct: 1316 SPQ-YTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSN 1351
>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
protein.
Length = 1887
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 375 SPQAYVPNQSPQGYASP-YSGQSVQTYPTNPQQSPQN 482
SPQ Y P ASP YS S P++PQ SP N
Sbjct: 1774 SPQ-YTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSN 1809
>AE014296-790|AAF47859.2| 750|Drosophila melanogaster CG15005-PA
protein.
Length = 750
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 372 HSPQAYVPNQSPQGYASPYSGQSVQTYPTNPQQSPQNY 485
H +Y +Q P+ + S Y TY PQ P NY
Sbjct: 394 HPSSSY--DQPPEEHPSSYQHPPTSTYDQAPQHPPSNY 429
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,856,414
Number of Sequences: 53049
Number of extensions: 461947
Number of successful extensions: 1590
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1589
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1887744768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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