Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_C11
(517 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35639-8|CAI46560.1| 634|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z35639-7|CAA84697.3| 959|Caenorhabditis elegans Hypothetical pr... 29 1.5
AY571963-1|AAS78587.1| 959|Caenorhabditis elegans ATX-2 protein. 29 1.5
Z70756-9|CAA94797.1| 275|Caenorhabditis elegans Hypothetical pr... 28 3.4
U13876-13|AAA21172.3| 370|Caenorhabditis elegans Prion-like-(q/... 28 3.4
Z99171-6|CAB16309.2| 128|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 28 4.6
AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 28 4.6
AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 28 4.6
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr... 27 6.0
U80455-8|AAB37886.1| 337|Caenorhabditis elegans Hypothetical pr... 27 8.0
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr... 27 8.0
>Z35639-8|CAI46560.1| 634|Caenorhabditis elegans Hypothetical
protein D2045.1b protein.
Length = 634
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = +3
Query: 372 HSPQAYVPNQSPQGYASPYSGQSVQTYPTN----PQQSPQN-YQ 488
+ P VP S Q Y S Y GQ Q P PQQ+PQ YQ
Sbjct: 317 YGPPQMVPVTSQQFYHSQYQGQMQQAAPYQMKMMPQQAPQGAYQ 360
>Z35639-7|CAA84697.3| 959|Caenorhabditis elegans Hypothetical
protein D2045.1a protein.
Length = 959
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = +3
Query: 372 HSPQAYVPNQSPQGYASPYSGQSVQTYPTN----PQQSPQN-YQ 488
+ P VP S Q Y S Y GQ Q P PQQ+PQ YQ
Sbjct: 642 YGPPQMVPVTSQQFYHSQYQGQMQQAAPYQMKMMPQQAPQGAYQ 685
>AY571963-1|AAS78587.1| 959|Caenorhabditis elegans ATX-2 protein.
Length = 959
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = +3
Query: 372 HSPQAYVPNQSPQGYASPYSGQSVQTYPTN----PQQSPQN-YQ 488
+ P VP S Q Y S Y GQ Q P PQQ+PQ YQ
Sbjct: 642 YGPPQMVPVTSQQFYHSQYQGQMQQAAPYQMKMMPQQAPQGAYQ 685
>Z70756-9|CAA94797.1| 275|Caenorhabditis elegans Hypothetical
protein T06E4.11 protein.
Length = 275
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +3
Query: 381 QAYVPNQSPQGYASPYSGQSVQTYPTNPQQSPQNY 485
QA P Q PQG G Q P PQQ +Y
Sbjct: 155 QAPGPQQYPQGLQGSPQGSQQQQMPPQPQQQMPSY 189
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Frame = +3
Query: 375 SPQAYV--PNQSPQGYASPYSGQSVQTYPTNPQ---QSPQNYQAN 494
+PQ Y P Q P YA P Q YP+ Q Q+ Q Y N
Sbjct: 62 APQGYPQQPPQDPTQYAQPPQQQQPYPYPSQQQLQSQASQGYPQN 106
>U13876-13|AAA21172.3| 370|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 46
protein.
Length = 370
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +3
Query: 375 SPQAYVPNQSPQGYASPYSGQSVQTYPTNPQQSPQNYQAN 494
SP A+VP Q GY + Q YP QQ Q Y N
Sbjct: 9 SPYAFVPQQ---GYQQQNNFQQYYGYPQQQQQGNQYYNNN 45
>Z99171-6|CAB16309.2| 128|Caenorhabditis elegans Hypothetical
protein F47G4.6 protein.
Length = 128
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 153 VASMWDGLDSEHKSVYKQKTE 215
+A WD L E K YKQ+ E
Sbjct: 83 IARQWDSLTEEEKKAYKQRCE 103
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 268 YRRAVNKRIQQCTITRTMPTQPMATITKASPMAMVIPHKLTYQIN 402
YR + ++ T+T T+P +A +T + + HK+TY I+
Sbjct: 251 YRIIIRRKAIFFTVTLTIPCMLIANVTPFVFLILPNEHKMTYSIS 295
>AF025464-2|AAN84804.1| 496|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform a protein.
Length = 496
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/67 (23%), Positives = 25/67 (37%)
Frame = +3
Query: 285 QENPTMYNHSNNANSTXXXXXXXXXXXXXHSPQAYVPNQSPQGYASPYSGQSVQTYPTNP 464
Q+NP H + + QA +P + Q P G + T+P +
Sbjct: 237 QQNPRQQQHVYSNPQQGYQQNYQNLYTPPPAQQAPIPTEKTQIPRPPSHGSAWPTFPPHQ 296
Query: 465 QQSPQNY 485
Q +PQ Y
Sbjct: 297 QWTPQGY 303
>AF025464-1|AAN84805.1| 529|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform b protein.
Length = 529
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/67 (23%), Positives = 25/67 (37%)
Frame = +3
Query: 285 QENPTMYNHSNNANSTXXXXXXXXXXXXXHSPQAYVPNQSPQGYASPYSGQSVQTYPTNP 464
Q+NP H + + QA +P + Q P G + T+P +
Sbjct: 259 QQNPRQQQHVYSNPQQGYQQNYQNLYTPPPAQQAPIPTEKTQIPRPPSHGSAWPTFPPHQ 318
Query: 465 QQSPQNY 485
Q +PQ Y
Sbjct: 319 QWTPQGY 325
>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 397 INRHRDMHHLTRDSPFRLTRLTPSNRLKTTKP 492
+NR+ D+ +R SP R + PS + ++P
Sbjct: 1473 VNRYTDVQQFSRGSPIRTSSPVPSTQTTPSRP 1504
>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 397 INRHRDMHHLTRDSPFRLTRLTPSNRLKTTKP 492
+NR+ D+ +R SP R + PS + ++P
Sbjct: 1473 VNRYTDVQQFSRGSPIRTSSPVPSTQTTPSRP 1504
>U80455-8|AAB37886.1| 337|Caenorhabditis elegans Hypothetical
protein T01D1.5 protein.
Length = 337
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +2
Query: 275 GR*TRESNNVQSLEQCQLNLWQLLPRPVLWQWSFPTSLRT 394
GR ++ S + ++ +W L+P + W W P ++ T
Sbjct: 137 GRHQKKKTIRNSFQSMKIIIWMLMPLSIGWIWFLPDAVIT 176
>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical
protein C52E12.4 protein.
Length = 1487
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 347 PRPVLWQWSFPTSLRTKSIATGICITLLGTVRSDLPD*PP 466
P P + W + ++ + + +C+ L T RS+LP+ P
Sbjct: 351 PVPYVMGWYYEDTVPEELFQSNVCVVDLDTGRSELPEDVP 390
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,690,672
Number of Sequences: 27780
Number of extensions: 232739
Number of successful extensions: 777
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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