Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_C08
(307 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 58 2e-09
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 56 4e-09
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 56 4e-09
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569... 29 0.95
10_06_0056 - 10138050-10138136,10139298-10139720 26 6.7
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280... 26 6.7
10_08_0902 - 21449748-21449993,21450136-21450460,21450658-214509... 25 8.9
06_01_0546 + 3895007-3895888,3896506-3896682 25 8.9
06_01_0543 + 3883184-3884065,3884683-3884859 25 8.9
06_01_0533 + 3845128-3846009,3846627-3846803 25 8.9
02_04_0226 + 21073967-21074179,21074711-21074832,21074926-210753... 25 8.9
02_02_0451 + 10387353-10387580,10387675-10387934,10388160-103884... 25 8.9
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 57.6 bits (133), Expect = 2e-09
Identities = 25/42 (59%), Positives = 31/42 (73%)
Frame = +2
Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPNYIRIQRQKAVLQR 307
LFEKR K F IG + P +DL RFVRWP +RIQRQ+ VL++
Sbjct: 25 LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQ 66
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 56.4 bits (130), Expect = 4e-09
Identities = 23/42 (54%), Positives = 31/42 (73%)
Frame = +2
Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPNYIRIQRQKAVLQR 307
LFEKR K F IG + P +DL RFV+WP +RIQRQ+ +L++
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQ 65
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 56.4 bits (130), Expect = 4e-09
Identities = 23/42 (54%), Positives = 31/42 (73%)
Frame = +2
Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPNYIRIQRQKAVLQR 307
LFEKR K F IG + P +DL RFV+WP +RIQRQ+ +L++
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQ 49
>03_02_0112 +
5689439-5689474,5689629-5689778,5690194-5690361,
5691334-5691458,5691914-5692007,5692844-5692942,
5693730-5693910,5694051-5694166,5694758-5694913,
5695226-5695354,5695554-5695718
Length = 472
Score = 28.7 bits (61), Expect = 0.95
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 292 LLTLDANIVRPSHETG*ISGWL 227
LLT + N VRPSH + GW+
Sbjct: 102 LLTKNPNFVRPSHRLNEVQGWV 123
>10_06_0056 - 10138050-10138136,10139298-10139720
Length = 169
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 305 AVTQPFDAGCEYSSAIARNGIDLW 234
AV FDAGC+ + +A N DL+
Sbjct: 115 AVRHGFDAGCKRAELLAINDTDLY 138
>03_01_0359 -
2805094-2805175,2805256-2805347,2805443-2805517,
2805582-2805675,2805769-2805872,2806777-2806885,
2807397-2807609,2808170-2808289,2809060-2809115,
2809210-2809287,2809374-2809733
Length = 460
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 178 PSIREENKELCYWPGHPAN 234
P E N ++C W GHP N
Sbjct: 90 PVDHEINSKICLWRGHPWN 108
>10_08_0902 -
21449748-21449993,21450136-21450460,21450658-21450905,
21451091-21451324
Length = 350
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 193 ENKELCYWPGHPANQRSIPFRAMAELYSHPASK 291
E+++L +WP HP++ FR E YS +K
Sbjct: 146 ESRDLRFWPAHPSS-----FRNSMERYSLETAK 173
>06_01_0546 + 3895007-3895888,3896506-3896682
Length = 352
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 190 EENKELCYWPGHPANQRSI 246
EE + L +WP HPA R +
Sbjct: 169 EEERRLEFWPEHPAALRGL 187
>06_01_0543 + 3883184-3884065,3884683-3884859
Length = 352
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 190 EENKELCYWPGHPANQRSI 246
EE + L +WP HPA R +
Sbjct: 169 EEERRLEFWPEHPAALRGL 187
>06_01_0533 + 3845128-3846009,3846627-3846803
Length = 352
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 190 EENKELCYWPGHPANQRSI 246
EE + L +WP HPA R +
Sbjct: 169 EEERRLEFWPEHPAALRGL 187
>02_04_0226 + 21073967-21074179,21074711-21074832,21074926-21075370,
21075453-21075559,21075656-21076463,21076691-21077128,
21077349-21077537,21077616-21077843,21077943-21078140,
21078304-21078379,21078452-21078593,21078749-21079238
Length = 1151
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = -1
Query: 211 SKVLCSLLE*RVYNLLGLNFLHHKWSGRYFFPYXXXXXXXXXLEWILT 68
S+ LLE + G+ +L ++ RY FP +WI T
Sbjct: 857 SRARIQLLEPIIKGSGGVEYLQKAFADRYGFPSNASVALRSTAQWIST 904
>02_02_0451 +
10387353-10387580,10387675-10387934,10388160-10388484,
10388819-10389061
Length = 351
Score = 25.4 bits (53), Expect = 8.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +1
Query: 190 EENKELCYWPGHPANQRSI 246
+E ++L +WP HP + R +
Sbjct: 147 KEEQDLAFWPDHPESFRDV 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,235,790
Number of Sequences: 37544
Number of extensions: 111838
Number of successful extensions: 284
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -