Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C08
         (307 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    72   7e-14
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    72   7e-14
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    72   7e-14
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    72   7e-14
Z74476-5|CAA98965.1|  325|Caenorhabditis elegans Hypothetical pr...    27   2.0  
U88168-1|AAC24403.2|  376|Caenorhabditis elegans Hypothetical pr...    25   7.9  
AF038609-6|AAK29795.1|  245|Caenorhabditis elegans Hypothetical ...    25   7.9  

>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 72.1 bits (169), Expect = 7e-14
 Identities = 29/42 (69%), Positives = 37/42 (88%)
 Frame = +2

Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPNYIRIQRQKAVLQR 307
           LFEKR +NF IGQDIQP +D++RFV+WP YIR+QRQ A+LQ+
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQK 176


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 72.1 bits (169), Expect = 7e-14
 Identities = 29/42 (69%), Positives = 37/42 (88%)
 Frame = +2

Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPNYIRIQRQKAVLQR 307
           LFEKR +NF IGQDIQP +D++RFV+WP YIR+QRQ A+LQ+
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQK 176


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 72.1 bits (169), Expect = 7e-14
 Identities = 29/42 (69%), Positives = 37/42 (88%)
 Frame = +2

Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPNYIRIQRQKAVLQR 307
           LFEKR +NF IGQDIQP +D++RFV+WP YIR+QRQ A+LQ+
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQK 73


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 72.1 bits (169), Expect = 7e-14
 Identities = 29/42 (69%), Positives = 37/42 (88%)
 Frame = +2

Query: 182 LFEKRTKNFAIGQDIQPTRDLSRFVRWPNYIRIQRQKAVLQR 307
           LFEKR +NF IGQDIQP +D++RFV+WP YIR+QRQ A+LQ+
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQK 73


>Z74476-5|CAA98965.1|  325|Caenorhabditis elegans Hypothetical
           protein W05B10.5 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 237 LVGWMSWPIAKF--FVLFSNRGFTIF 166
           LVGW +W I  F   +L SNR F +F
Sbjct: 97  LVGWFAWCIGPFSQVLLTSNRIFAVF 122


>U88168-1|AAC24403.2|  376|Caenorhabditis elegans Hypothetical
           protein K11H12.9 protein.
          Length = 376

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 186 SRREQRTLLLARTSSQPEIYPVS 254
           +RRE R ++L R    P I P+S
Sbjct: 143 ARREYRNIILCRLLPHPNILPIS 165


>AF038609-6|AAK29795.1|  245|Caenorhabditis elegans Hypothetical
           protein C54E4.1 protein.
          Length = 245

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 186 SRREQRTLLLARTSSQPEIYPVSCDGRTIFASSVKRL 296
           SR+   T LL   S++ +IY +  +   I A+ +KRL
Sbjct: 145 SRKGSTTELLTPNSARSDIYSIEFNQAAIAAARLKRL 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,111,378
Number of Sequences: 27780
Number of extensions: 94742
Number of successful extensions: 202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)