Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C06
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    30   0.17 
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    29   0.40 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   1.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   3.7  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   6.5  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   6.5  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   6.5  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   8.6  

>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
 Frame = +1

Query: 67  LFIIFVTVIAINANPVLTRQKLQKQEERVRYCSNLLHFNNFYYSLEEQKNVSGIPA---- 234
           L +  + +IA+NA+P + + K         + + LLHF   +  LE   ++  + A    
Sbjct: 122 LLVFILLIIALNASPSIEQNKYASFLASA-WNTALLHFTPLFNLLEGMASLLVVQALGHL 180

Query: 235 -DMNIHWKTGN-IFFTLI--SEEMKMSLQVLYTSGEF 333
               +H K+ N +FF L+  S  + MSL +LY    F
Sbjct: 181 SRWLVHNKSENWMFFILLNASSAISMSLYLLYRVSSF 217


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 367 TCVDNLNDVVYLATDNGVYKYHYDSPVDLY 456
           T +D LND  Y   +NGVYK  + +  + Y
Sbjct: 166 TKIDELNDYFYDTVNNGVYKTGFATTAEAY 195


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 262 NIFFTLISEEMKMSLQVLYTSGEFVTIKVTGLGQSTCVDNL 384
           NIF  L+     + +   + S E  ++  TG+  S C DNL
Sbjct: 667 NIFECLVDNLALLHIFQFWMSNEVTSVNCTGIVLSFCCDNL 707


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +1

Query: 61   KKLFIIFVTVIAINANPVLTRQKLQKQEERVRYCSNLLHFNNFYYSLEEQKNVS 222
            ++++++F T++  N  P+L       + ++  YC  +L+  NFY+ +   K  S
Sbjct: 1361 EEIYLLFKTLL--NNLPILRTCFFVTRSKKYPYCQVVLNEPNFYFQVLPYKGES 1412


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 373 VDNLNDVVYLATDNGVYKYHYDS 441
           + NL    YLAT +GV+ Y Y+S
Sbjct: 348 IGNLVRPGYLATSDGVWPYSYNS 370


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 385 NDVVYLATDNGVYKYHYDSPVDLYTGL 465
           ND+     D  V +  YD  VD++ GL
Sbjct: 189 NDLYVRKNDGNVQRLTYDGTVDVFNGL 215


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +3

Query: 30  TLICGFY*KDEETVYNI 80
           T++ GF+ KD++T+Y +
Sbjct: 192 TVVSGFFSKDQQTIYTV 208


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 365 QPALITSTMSFTSLPTMEYINIITTR 442
           QP    ST+S T++P+M + N I++R
Sbjct: 636 QPQPKISTVSDTAVPSMSFANNISSR 661


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,612
Number of Sequences: 5004
Number of extensions: 36038
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)