Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C06
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.           29   2.6  
U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein rec...    29   2.6  
AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor...    29   2.6  
AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor medi...    29   2.6  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    28   4.5  
Z70310-3|CAA94365.1|  506|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z93393-4|CAB07699.1|  360|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 208 QKNVSGIPADMNIHWKTGNIFFTLISEEMKMSLQVLYTSGEFVTIKVTGLGQ 363
           ++NV G+ +++ + W  GN+FFT  S      + +   SG F    + G  Q
Sbjct: 463 RENVIGV-SNVAVDWIGGNVFFTQKSPSPSAGISICTMSGMFCRRVIEGKEQ 513


>U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein
           receptor precursor protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 208 QKNVSGIPADMNIHWKTGNIFFTLISEEMKMSLQVLYTSGEFVTIKVTGLGQ 363
           ++NV G+ +++ + W  GN+FFT  S      + +   SG F    + G  Q
Sbjct: 463 RENVIGV-SNVAVDWIGGNVFFTQKSPSPSAGISICTMSGMFCRRVIEGKEQ 513


>AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor
           RME-2 protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 208 QKNVSGIPADMNIHWKTGNIFFTLISEEMKMSLQVLYTSGEFVTIKVTGLGQ 363
           ++NV G+ +++ + W  GN+FFT  S      + +   SG F    + G  Q
Sbjct: 463 RENVIGV-SNVAVDWIGGNVFFTQKSPSPSAGISICTMSGMFCRRVIEGKEQ 513


>AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor
           mediated endocytosis protein2 protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 208 QKNVSGIPADMNIHWKTGNIFFTLISEEMKMSLQVLYTSGEFVTIKVTGLGQ 363
           ++NV G+ +++ + W  GN+FFT  S      + +   SG F    + G  Q
Sbjct: 463 RENVIGV-SNVAVDWIGGNVFFTQKSPSPSAGISICTMSGMFCRRVIEGKEQ 513


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
            ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 301  SLQVLYTSGEFVTIKVTGLGQS-TCVDNLNDVVYLATDNGVYKYHYDS 441
            S Q + + G  VT    G+  + TC +     V + TDN ++ Y+ DS
Sbjct: 1565 STQNIVSRGLVVTASYGGVTYTITCTNGTGKFVEVDTDNAIFSYNADS 1612


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
            protein ZK945.9 protein.
          Length = 3178

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 301  SLQVLYTSGEFVTIKVTGLGQS-TCVDNLNDVVYLATDNGVYKYHYDS 441
            S Q + + G  VT    G+  + TC +     V + TDN ++ Y+ DS
Sbjct: 1565 STQNIVSRGLVVTASYGGVTYTITCTNGTGKFVEVDTDNAIFSYNADS 1612


>Z70310-3|CAA94365.1|  506|Caenorhabditis elegans Hypothetical
           protein R11A8.3 protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +1

Query: 238 MNIHWKTGNIFFTLISEEMKMSLQVLYTSGEFVTIKVTGLGQSTCVDNLNDVVYLATDNG 417
           +NI +    +  + IS   K++ Q+L TSG  VT+ +  +  +  ++N  D   L    G
Sbjct: 21  LNILFYVPTLSHSHISFNTKLA-QLLATSGHQVTVLLAQVDDALLIENATDFAVLRKKVG 79

Query: 418 VYKYH 432
           V + H
Sbjct: 80  VPRGH 84


>Z93393-4|CAB07699.1|  360|Caenorhabditis elegans Hypothetical
           protein Y48E1B.3 protein.
          Length = 360

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 487 LRTLHLRPNPYTDLQASRNDIYI 419
           +R L++ P PY  L+ SRN I++
Sbjct: 37  IRHLNVFPQPYNTLETSRNTIFL 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,451,883
Number of Sequences: 27780
Number of extensions: 201759
Number of successful extensions: 630
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)