Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_C05
(241 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 108 8e-26
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 108 1e-25
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2... 25 1.3
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 24 3.1
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 23 4.1
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 23 4.1
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 23 5.4
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 23 5.4
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 23 7.1
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy... 22 9.4
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch... 22 9.4
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 22 9.4
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8... 22 9.4
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 108 bits (260), Expect = 8e-26
Identities = 47/79 (59%), Positives = 64/79 (81%)
Frame = +2
Query: 5 RVEKIPELPLVVSDNVQEINKTKQAVIFLRRINAWSDVLKVYKSQRLRAGKGKMRNRRRV 184
R+E+IPE+PLVV D VQ KTK+AV L+ I A+ DV+KV S++LRAGKGK+RNRR V
Sbjct: 143 RIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHV 202
Query: 185 QRKGPLIIYNKDKGLTRAF 241
QR+GPL+++N+D G+ +AF
Sbjct: 203 QRRGPLVVFNEDTGIVKAF 221
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 108 bits (259), Expect = 1e-25
Identities = 47/79 (59%), Positives = 64/79 (81%)
Frame = +2
Query: 5 RVEKIPELPLVVSDNVQEINKTKQAVIFLRRINAWSDVLKVYKSQRLRAGKGKMRNRRRV 184
R+E+IPE+PLVV D VQ KTK+AV L+ I A+ DV+KV S++LRAGKGK+RNRR V
Sbjct: 143 RIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHV 202
Query: 185 QRKGPLIIYNKDKGLTRAF 241
QR+GPL+++N+D G+ +AF
Sbjct: 203 QRRGPLVVFNEDAGIVKAF 221
>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 25.0 bits (52), Expect = 1.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 78 ACLVLLISWTLSETTNGNSGIFSTLV 1
AC L W L TTN G+ S +V
Sbjct: 90 ACFHFLSEWLLFRTTNLGPGLLSPIV 115
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 194 LCVVHDDDYAFSLYRHAG 141
+C+ DD + L+RHAG
Sbjct: 452 VCMYIDDGLEYGLFRHAG 469
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 176 RRVQRKGPLIIYNKDKGL 229
R+ ++KG ++ +KDKGL
Sbjct: 545 RKSRKKGTALVLDKDKGL 562
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 155 KGKMRNRRRVQRKGPLIIYNKDKGLT 232
KGK+ +R+ + R L+ NKD GLT
Sbjct: 108 KGKIFSRKELNRLQALVYKNKD-GLT 132
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 51 TLSETTNGNSGIFSTLV 1
TLS N G+FSTL+
Sbjct: 963 TLSLVVNAEEGVFSTLI 979
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 23.0 bits (47), Expect = 5.4
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +2
Query: 11 EKIPELPLVVSDNVQEINKT---KQAVIFLRRI 100
E PEL L+ S+N+Q+ K K+ IFL I
Sbjct: 167 ETYPELELMDSNNIQKRGKNAQGKKKFIFLDEI 199
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 22.6 bits (46), Expect = 7.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 161 KMRNRRRVQRKGPLII 208
K R RV RKGPLI+
Sbjct: 26 KTRGSFRVPRKGPLIL 41
>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +2
Query: 8 VEKIPELPLVVSDNVQEINKTKQAVIFLRRI 100
+EK E V+ +NV+ N T+Q + + ++
Sbjct: 323 IEKSTEKDKVLEENVESYNPTEQRPLVVMQL 353
>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
Tim17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 22.2 bits (45), Expect = 9.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 236 HESDPCPYYR**GVLCVVHDDDYAFSLYRHAGAV 135
H DPCPY +++D AFS+ GA+
Sbjct: 6 HTRDPCPY-------VILNDFGAAFSMGTIGGAI 32
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 5 RVEKIPELPLVVSDNVQEI 61
R+EK LPL ++ VQE+
Sbjct: 75 RIEKPSTLPLELTQEVQEV 93
>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
Cut8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 5 RVEKIPELPLVVSDNVQEINKTKQ 76
++E P +PL+ + ++E NKT Q
Sbjct: 179 QLEDRPVVPLLPLEELEEHNKTSQ 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 849,813
Number of Sequences: 5004
Number of extensions: 12179
Number of successful extensions: 30
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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