Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_C05
(241 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 87 2e-18
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 87 2e-18
11_06_0265 - 21788531-21789798,21789914-21789947 27 2.8
01_07_0130 + 41262652-41262798,41262958-41263056,41263155-412632... 26 3.7
02_05_0364 + 28304743-28304814,28305021-28305197,28307309-283074... 25 6.5
10_08_0986 + 22050631-22051224,22051493-22051703,22051791-220520... 25 8.5
02_05_0318 + 27856187-27856879,27857050-27857385,27858743-27859495 25 8.5
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729... 25 8.5
02_05_0061 + 25506648-25509399,25509564-25509901,25510392-255105... 25 8.5
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 86.6 bits (205), Expect = 2e-18
Identities = 39/80 (48%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Frame = +2
Query: 5 RVEKIPELPLVVSDNVQEINKTKQAVIFLRRINAWSDVLKVYKSQRLRAGKGKMRNRRRV 184
R+E +PELPLV+SD+ + I KT QA+ L+++ A++D K S +R GKGKMRNRR +
Sbjct: 147 RIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYI 206
Query: 185 QRKGPLIIYNKD-KGLTRAF 241
RKGPLI+Y + + +AF
Sbjct: 207 NRKGPLIVYGTEGSKIVKAF 226
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 86.6 bits (205), Expect = 2e-18
Identities = 38/72 (52%), Positives = 53/72 (73%)
Frame = +2
Query: 5 RVEKIPELPLVVSDNVQEINKTKQAVIFLRRINAWSDVLKVYKSQRLRAGKGKMRNRRRV 184
R+E +PE PLVVSD+++ I KT Q++ L++I A++D K S +RAGKGKMRNRR +
Sbjct: 146 RIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYI 205
Query: 185 QRKGPLIIYNKD 220
RKGPLI+Y +
Sbjct: 206 NRKGPLIVYGTE 217
>11_06_0265 - 21788531-21789798,21789914-21789947
Length = 433
Score = 26.6 bits (56), Expect = 2.8
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 197 VLCVVHDDDYAFSLYR 150
V+C +H D+YA +LY+
Sbjct: 171 VVCTIHADEYAMALYK 186
>01_07_0130 +
41262652-41262798,41262958-41263056,41263155-41263220,
41264073-41264255
Length = 164
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 17 IPELPLVVSDNVQEINKTKQAVIF 88
+ ELP V+SDN +++N T +A IF
Sbjct: 6 VKELPKVLSDNFEQLN-TSRASIF 28
>02_05_0364 +
28304743-28304814,28305021-28305197,28307309-28307431,
28307644-28308043,28308129-28308242,28308359-28308454,
28308598-28308791
Length = 391
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = -2
Query: 147 RRRCDLYTLRTSDHALIRLRKMTACLVLLISWTLSETTNGNSGIFSTL 4
R+R D+ HA + + ++ + ++ SE+TN N+ I + +
Sbjct: 148 RKREDIRLQTAQMHAALSVARLATAVARMVGNCQSESTNANNTIMTAI 195
>10_08_0986 +
22050631-22051224,22051493-22051703,22051791-22052082,
22052415-22052780,22052878-22052955,22053099-22053327
Length = 589
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 20 PELPLVVSDNVQEINKTKQAVIFLR 94
PE +++ DNV+ +NK ++ V+ +R
Sbjct: 530 PEGAVILRDNVEVLNKVRRTVMGMR 554
>02_05_0318 + 27856187-27856879,27857050-27857385,27858743-27859495
Length = 593
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 98 INAWSDVLKVYKSQRLRAGKGKMRNRRRVQ 187
I+ W D KV+K + L +G G + +Q
Sbjct: 283 ISEWLDKYKVFKVEELESGTGGFDDEHLIQ 312
>02_05_0226 + 26971851-26972034,26972734-26972834,26972876-26972978,
26973335-26973477,26973525-26973605,26973929-26974015,
26974097-26974239,26974746-26974896,26974973-26975095,
26975362-26975445,26975531-26975718,26976726-26976900,
26977008-26977129,26977231-26977310,26977532-26977590,
26977921-26978075,26978680-26978858,26980050-26980162,
26980243-26980413,26980552-26980680,26980756-26980856,
26980942-26981059,26981739-26981818,26983230-26983302,
26983865-26983950,26984025-26984076,26984221-26984352,
26984560-26984628,26984912-26985004,26985806-26985901,
26986710-26986808,26986894-26986986,26987459-26987608,
26988391-26988549
Length = 1323
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 44 DNVQEINKTKQAVIFLRR 97
DNVQ + K KQ V+F+ R
Sbjct: 959 DNVQLLEKLKQLVLFIER 976
>02_05_0061 + 25506648-25509399,25509564-25509901,25510392-25510593,
25510779-25510854,25512036-25512294
Length = 1208
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 122 KVYKSQRLRAGKGKMRNRR 178
KV Q LR GKGK +NR+
Sbjct: 1140 KVKTDQILREGKGKRKNRK 1158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,783,362
Number of Sequences: 37544
Number of extensions: 90567
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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