Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C05
         (241 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    99   5e-22
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p...    26   3.1  
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p...    26   3.1  
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p...    26   3.1  
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p...    26   3.1  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    25   7.2  
AF003137-9|AAB93646.3|  883|Caenorhabditis elegans Hypothetical ...    25   9.5  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 98.7 bits (235), Expect = 5e-22
 Identities = 42/78 (53%), Positives = 60/78 (76%)
 Frame = +2

Query: 8   VEKIPELPLVVSDNVQEINKTKQAVIFLRRINAWSDVLKVYKSQRLRAGKGKMRNRRRVQ 187
           ++++ E+PLVVSD V+   KTK+AV+FLRR + W+D+ KVY S+R RAGKGK+RNR+  Q
Sbjct: 143 IDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQ 202

Query: 188 RKGPLIIYNKDKGLTRAF 241
           + GP++IY +D    RAF
Sbjct: 203 KLGPVVIYGQDAECARAF 220


>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
            protein F35D11.11a protein.
          Length = 1840

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 101  NAWSDVLKVYKSQRLRAGKGKMRNRR 178
            +A SD+L  Y+S   +A KG++ N+R
Sbjct: 1184 SAISDILDKYRSAEEKANKGELDNQR 1209


>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
            protein F35D11.11c protein.
          Length = 1898

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 101  NAWSDVLKVYKSQRLRAGKGKMRNRR 178
            +A SD+L  Y+S   +A KG++ N+R
Sbjct: 1184 SAISDILDKYRSAEEKANKGELDNQR 1209


>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
            protein F35D11.11d protein.
          Length = 1671

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 101  NAWSDVLKVYKSQRLRAGKGKMRNRR 178
            +A SD+L  Y+S   +A KG++ N+R
Sbjct: 944  SAISDILDKYRSAEEKANKGELDNQR 969


>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
            protein F35D11.11b protein.
          Length = 1911

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 101  NAWSDVLKVYKSQRLRAGKGKMRNRR 178
            +A SD+L  Y+S   +A KG++ N+R
Sbjct: 1184 SAISDILDKYRSAEEKANKGELDNQR 1209


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 43  GQCPGDQQDQAGSHLPETDQCVV*RP*SVQITA-PACR 153
           GQ PG      G    ETD C+   P  V +TA PA R
Sbjct: 581 GQIPGADPQVTGCCCSETDNCLA--PAGVNVTAIPARR 616


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 43  GQCPGDQQDQAGSHLPETDQCVV*RP*SVQITA-PACR 153
           GQ PG      G    ETD C+   P  V +TA PA R
Sbjct: 581 GQIPGADPQVTGCCCSETDNCLA--PAGVNVTAIPARR 616


>AF003137-9|AAB93646.3|  883|Caenorhabditis elegans Hypothetical
           protein C27A12.9 protein.
          Length = 883

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 129 YTLRTSDHALIRLRKMTACLVLL-ISWTLSETTNGNSGIFS 10
           +T+R S+    +L  M+    LL +SWT  +    N+GIFS
Sbjct: 358 HTIRDSNTMEEQLDTMSRIQTLLRVSWTQFDDAYINAGIFS 398


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,802,733
Number of Sequences: 27780
Number of extensions: 74391
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)