Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C04
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c...    27   1.8  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   3.1  
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    25   7.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   9.5  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    24   9.5  

>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
           catalytic subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 443 IEIRIVAVNLFAHSLHRYLLQV 378
           I I +V +  F H +H YL QV
Sbjct: 7   IPIAVVQIAAFVHQIHEYLFQV 28


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
 Frame = +3

Query: 333 DEEIKKYVKQILEGAN------LEQITMKTVCKQVYSHYPDFD 443
           D  + + ++++ +GA+      LEQ+ +K + K   +HY +FD
Sbjct: 256 DPRVSQILERVRDGAHSMPEKQLEQVMVKNLGKNWMTHYSEFD 298


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 201 PSSPVYQQPLAVDPSS 154
           P  PV QQP +VDP +
Sbjct: 429 PEQPVTQQPASVDPQT 444


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 390 SAPSWPPRGFASRISLSP 337
           SAP+ PP G ASR S  P
Sbjct: 399 SAPALPPLGNASRTSTPP 416


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 434  RIVAVNLFAHSLHRYLLQVGPLEDLLHVFLYL 339
            +I++ N  A  LH YL  +G  + +   F Y+
Sbjct: 1222 QIISTNSIAPLLHSYLADIGLYQMIFENFAYV 1253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,191,510
Number of Sequences: 5004
Number of extensions: 16521
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)