Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C04
         (453 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0300 - 16617956-16618510                                         31   0.43 
08_02_1614 - 28243532-28244589,28245149-28245383,28245524-282457...    30   0.76 
06_02_0293 + 13849250-13849341,13850044-13850112,13850257-138502...    27   5.3  
07_03_0398 - 17690979-17690998,17691034-17691446,17691709-176917...    27   7.1  
05_03_0531 - 15073952-15074017,15075883-15076073,15076173-15076239     27   9.3  
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582...    27   9.3  

>10_08_0300 - 16617956-16618510
          Length = 184

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 390 SAPSWPPRGFASRISLSPRQWAAVLLSYPLA 298
           S  SW P+G A+  SL    WAA  L++ +A
Sbjct: 95  SGASWRPQGLAAAASLGTAAWAATALAFGVA 125


>08_02_1614 -
           28243532-28244589,28245149-28245383,28245524-28245734,
           28245834-28245907,28246465-28246665
          Length = 592

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = -1

Query: 426 GCKPVCTQSSSLSAPSWPPRGFASRISLSPRQWAAVLLSYPLARQI 289
           G K   + SSS SA      G A+ + LS R    VL S+PL+R I
Sbjct: 22  GAKASSSSSSSSSAADKAANGIAA-LKLSDRTCTGVLASHPLSRDI 66


>06_02_0293 +
           13849250-13849341,13850044-13850112,13850257-13850266,
           13850448-13850483,13850978-13851039,13851260-13851359,
           13851428-13851469,13851756-13851839,13851955-13852095
          Length = 211

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +2

Query: 173 KGCW*TGEEGQE 208
           KGCW  GEEGQE
Sbjct: 4   KGCWSKGEEGQE 15


>07_03_0398 -
           17690979-17690998,17691034-17691446,17691709-17691764,
           17691922-17692054,17694244-17694403,17694862-17694955,
           17695791-17695928,17696017-17696174,17696729-17696810,
           17697055-17697151,17698703-17698824,17699833-17699910,
           17700437-17700565,17701301-17701531
          Length = 636

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 356 HVFLYLLVSGRPFCFLIRW 300
           HVFL L++S + FC++  W
Sbjct: 67  HVFLVLILSLKDFCYVSEW 85


>05_03_0531 - 15073952-15074017,15075883-15076073,15076173-15076239
          Length = 107

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 303 ADKKAKRPPTDEEI 344
           A+KK KRPP DEE+
Sbjct: 83  AEKKPKRPPIDEEL 96


>02_01_0782 +
           5827364-5827441,5827733-5827787,5828761-5828849,
           5829167-5829191,5829645-5829683,5830316-5830433,
           5830857-5831023,5831155-5831518,5831589-5831701,
           5832185-5832310,5832436-5833339,5833694-5834036
          Length = 806

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 335 RGDKEIREANPRGGQLGADNDEDCVQTGLQPLSGFRSRA 451
           R    +R  +P GG+L +  D     +  + LSG RSR+
Sbjct: 719 RSRSPVRSRSPAGGKLRSHGDRSRSMSRSRSLSGSRSRS 757


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,382,479
Number of Sequences: 37544
Number of extensions: 125917
Number of successful extensions: 545
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)