Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C04
         (453 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X64229-1|CAA45536.1|  375|Homo sapiens putative oncogene protein.      72   1e-12
BC035259-1|AAH35259.1|  375|Homo sapiens DEK oncogene (DNA bindi...    72   1e-12
AL031774-1|CAI20082.2|  375|Homo sapiens DEK oncogene (DNA bindi...    72   1e-12
BC032831-1|AAH32831.2|  494|Homo sapiens G protein-coupled recep...    29   7.4  
AY288418-1|AAP72127.1|  494|Homo sapiens G protein-coupled recep...    29   7.4  

>X64229-1|CAA45536.1|  375|Homo sapiens putative oncogene protein.
          Length = 375

 Score = 71.7 bits (168), Expect = 1e-12
 Identities = 28/49 (57%), Positives = 40/49 (81%)
 Frame = +3

Query: 300 PADKKAKRPPTDEEIKKYVKQILEGANLEQITMKTVCKQVYSHYPDFDL 446
           P  KK K+PPTDEE+K+ +K++L  ANLE++TMK +CK+VY +YP +DL
Sbjct: 311 PLIKKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDL 359


>BC035259-1|AAH35259.1|  375|Homo sapiens DEK oncogene (DNA binding)
           protein.
          Length = 375

 Score = 71.7 bits (168), Expect = 1e-12
 Identities = 28/49 (57%), Positives = 40/49 (81%)
 Frame = +3

Query: 300 PADKKAKRPPTDEEIKKYVKQILEGANLEQITMKTVCKQVYSHYPDFDL 446
           P  KK K+PPTDEE+K+ +K++L  ANLE++TMK +CK+VY +YP +DL
Sbjct: 311 PLIKKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDL 359


>AL031774-1|CAI20082.2|  375|Homo sapiens DEK oncogene (DNA binding)
           protein.
          Length = 375

 Score = 71.7 bits (168), Expect = 1e-12
 Identities = 28/49 (57%), Positives = 40/49 (81%)
 Frame = +3

Query: 300 PADKKAKRPPTDEEIKKYVKQILEGANLEQITMKTVCKQVYSHYPDFDL 446
           P  KK K+PPTDEE+K+ +K++L  ANLE++TMK +CK+VY +YP +DL
Sbjct: 311 PLIKKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDL 359


>BC032831-1|AAH32831.2|  494|Homo sapiens G protein-coupled receptor
           135 protein.
          Length = 494

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -2

Query: 452 VREIEIRIVAVNLFAHSLHRYLLQVGPLEDLLHVFLYLLVSGRPFCFLI 306
           VR  ++R+  VN +A  L R+  +V     +L + ++++    P+CFL+
Sbjct: 304 VRLSDVRVRPVNTYARVL-RFFSEVRTATTVLIMIVFVICCWGPYCFLV 351


>AY288418-1|AAP72127.1|  494|Homo sapiens G protein-coupled receptor
           135 protein.
          Length = 494

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -2

Query: 452 VREIEIRIVAVNLFAHSLHRYLLQVGPLEDLLHVFLYLLVSGRPFCFLI 306
           VR  ++R+  VN +A  L R+  +V     +L + ++++    P+CFL+
Sbjct: 304 VRLSDVRVRPVNTYARVL-RFFSEVRTATTVLIMIVFVICCWGPYCFLV 351


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,487,218
Number of Sequences: 237096
Number of extensions: 669323
Number of successful extensions: 2810
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2810
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3758237868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)