Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C04
         (453 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79757-5|CAB02126.2|  551|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AY491013-1|AAS18682.1|  464|Caenorhabditis elegans nose resistan...    29   2.1  
AY491012-1|AAS18681.1|  573|Caenorhabditis elegans nose resistan...    29   2.1  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z81587-10|CAH10780.1|  483|Caenorhabditis elegans Hypothetical p...    27   8.4  
Z81587-9|CAB04708.2|  511|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U80455-10|AAB37887.2|  395|Caenorhabditis elegans Activated in b...    27   8.4  
U50197-3|AAA91256.2|  327|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U41007-17|AAA82261.1|  507|Caenorhabditis elegans Hypothetical p...    27   8.4  

>Z79757-5|CAB02126.2|  551|Caenorhabditis elegans Hypothetical
           protein F55B12.5 protein.
          Length = 551

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 216 RKPSCPSSPVYQQPLAVDPSSF 151
           +KP  P SP YQ+P A DP+ F
Sbjct: 201 QKPIPPESPNYQKPEAGDPNGF 222


>AY491013-1|AAS18682.1|  464|Caenorhabditis elegans nose resistant
           to fluoxetine protein.
          Length = 464

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 216 RKPSCPSSPVYQQPLAVDPSSF 151
           +KP  P SP YQ+P A DP+ F
Sbjct: 89  QKPIPPESPNYQKPEAGDPNGF 110


>AY491012-1|AAS18681.1|  573|Caenorhabditis elegans nose resistant
           to fluoxetine protein.
          Length = 573

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 216 RKPSCPSSPVYQQPLAVDPSSF 151
           +KP  P SP YQ+P A DP+ F
Sbjct: 198 QKPIPPESPNYQKPEAGDPNGF 219


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 453 CARDRNPDSGCKPVCTQSSSLSAPSWPP 370
           C + + P   C P CTQS S S  +  P
Sbjct: 367 CVQQQQPMQQCAPACTQSCSQSCSAAQP 394


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 453 CARDRNPDSGCKPVCTQSSSLSAPSWPP 370
           C + + P   C P CTQS S S  +  P
Sbjct: 367 CVQQQQPMQQCAPACTQSCSQSCSAAQP 394


>Z81587-10|CAH10780.1|  483|Caenorhabditis elegans Hypothetical
           protein T06G6.3b protein.
          Length = 483

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 303 ADKKAKRPPTDEEIKKYVKQI--LEGANLEQITMKTVCKQVYSHY 431
           AD K K+   + EI+K  ++I  +     EQ   K VCK+  +H+
Sbjct: 142 ADAKKKQKSLNREIEKLKERIEKMAAEEPEQEAKKDVCKRNVNHF 186


>Z81587-9|CAB04708.2|  511|Caenorhabditis elegans Hypothetical
           protein T06G6.3a protein.
          Length = 511

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 303 ADKKAKRPPTDEEIKKYVKQI--LEGANLEQITMKTVCKQVYSHY 431
           AD K K+   + EI+K  ++I  +     EQ   K VCK+  +H+
Sbjct: 170 ADAKKKQKSLNREIEKLKERIEKMAAEEPEQEAKKDVCKRNVNHF 214


>U80455-10|AAB37887.2|  395|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 11 protein.
          Length = 395

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 453 CARDRNPDSGCKPVCTQSSSLS 388
           C + + P S C+P C QS S S
Sbjct: 371 CIQQQQPISQCQPACQQSCSAS 392


>U50197-3|AAA91256.2|  327|Caenorhabditis elegans Hypothetical
           protein F25E2.3 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 407 HSLHRYLLQVGPLEDLLHVFLYLLVSGRPFC 315
           HSLH Y ++ G ++  +   +  +  GR FC
Sbjct: 86  HSLHSYFIKTGSVDKPILYMIDRIRDGRSFC 116


>U41007-17|AAA82261.1|  507|Caenorhabditis elegans Hypothetical
           protein C33H5.2 protein.
          Length = 507

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 415 CLHTVFIVICSKLAPSRICFTYFFISSSVGGRFAFLSAGA 296
           C   V +V C+  A   + FT+       GGRFA L   A
Sbjct: 2   CRRNVILVFCASFA---LFFTFIIFGRYPGGRFAVLYENA 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,761,240
Number of Sequences: 27780
Number of extensions: 97612
Number of successful extensions: 422
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)