Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C04
         (453 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 370 SRICFTYFFISSSVGGRFAFLS 305
           SRI F  FF++ +V   FA+LS
Sbjct: 427 SRIVFPLFFLAINVFYWFAYLS 448


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 414 VCTQSSSLSAPSWPPRGFASRISLSPRQWAAVLLSYPLARQ 292
           +C  +++    S     + +  SLS   + AVL  YPL R+
Sbjct: 523 ICLLTNARRVASVRAETYCNLFSLSVDHFNAVLDQYPLMRR 563


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 414 VCTQSSSLSAPSWPPRGFASRISLSPRQWAAVLLSYPLARQ 292
           +C  +++    S     + +  SLS   + AVL  YPL R+
Sbjct: 491 ICLLTNARRVASVRAETYCNLFSLSVDHFNAVLDQYPLMRR 531


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,004
Number of Sequences: 438
Number of extensions: 1183
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)