Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_C03
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1007 + 13160772-13161311 32 0.25
09_04_0306 + 16555664-16556623 30 1.3
03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856 29 1.7
02_05_0742 + 31415862-31417088 29 3.0
03_05_0057 + 20350971-20351405 28 5.3
02_01_0740 - 5511434-5511547,5511952-5512023,5512106-5512300,551... 28 5.3
08_01_0263 + 2141679-2141835,2142033-2142448 27 7.0
09_04_0335 + 16791874-16792178,16792234-16792957 27 9.2
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 27 9.2
08_01_0343 - 3025577-3025810,3026428-3026505,3026630-3026748,302... 27 9.2
06_03_1310 + 29238644-29240260 27 9.2
>03_02_1007 + 13160772-13161311
Length = 179
Score = 32.3 bits (70), Expect = 0.25
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 137 PNPPGSLSFPLHDSPLPTGVAAAPRHPYLYVNNHYK 244
P PP + P +P P VAA P+ PY Y + +K
Sbjct: 9 PAPPSPVQAPAPAAPPPVSVAARPQAPYYYYCHGWK 44
>09_04_0306 + 16555664-16556623
Length = 319
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 104 PATRRRVSISSPNPPGSLSFPLHDSPLPTGVAAAPRHP 217
PA P PPGS+S P++ SP+ AA R P
Sbjct: 183 PAPMVAARYYGPAPPGSVSHPINGSPVVPAAAALWRVP 220
>03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856
Length = 1002
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 14 VDIRFAVGLLGRGAV*CGAALYCAAETRRVPATRRRVSISSPNPPGSLSFPL 169
+++R A GLLGR A +C+ A+RR V+++ PP S S L
Sbjct: 40 LELRGAAGLLGRWPTGSAVADHCSWPGVTCDASRRVVAVAVAAPPASGSSEL 91
>02_05_0742 + 31415862-31417088
Length = 408
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 71 ALYCAAETRRVPATRRRVSISSPNPPGSLSFPLHDSPLPTGVAAA 205
A+ A T +PA ++IS + SLS P H LP+ AAA
Sbjct: 121 AVIAATGTGTIPANFTSLNISLRSSGSSLSAPAHLRALPSPAAAA 165
>03_05_0057 + 20350971-20351405
Length = 144
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 90 SAAQYSAAPHHTAPRPNKPTA 28
+AA+ APHH P P++P+A
Sbjct: 33 AAARPDEAPHHRQPAPDRPSA 53
>02_01_0740 -
5511434-5511547,5511952-5512023,5512106-5512300,
5512408-5512611,5512690-5512848,5513144-5513249,
5513387-5513554,5513644-5513834,5514410-5514634,
5514818-5514935,5515023-5515195,5515280-5515327,
5515484-5515589,5515697-5515802,5516211-5516332,
5516661-5516741,5516844-5516934,5517036-5517132,
5517287-5517919
Length = 1002
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/31 (54%), Positives = 18/31 (58%)
Frame = +2
Query: 134 SPNPPGSLSFPLHDSPLPTGVAAAPRHPYLY 226
SP PP S PL + LP G AAPR P LY
Sbjct: 21 SPAPPPPRS-PLAER-LPAGQIAAPRSPALY 49
>08_01_0263 + 2141679-2141835,2142033-2142448
Length = 190
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +2
Query: 32 VGLLGRGAV*CGAALYCAAETRRVPATRRRVSISSPNPPGS 154
+G LGR CG +C A + R SI SP PPGS
Sbjct: 92 LGRLGRRYFICGVPGHCDAGMKL--EVRTLCSIPSPPPPGS 130
>09_04_0335 + 16791874-16792178,16792234-16792957
Length = 342
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 105 GTRLVSAAQYSAAPHHTAPRPNKPTAKRISTPR 7
G +L S A P H A RP +P +ST R
Sbjct: 239 GYKLASRADAGQGPRHRARRPQQPWHTPLSTRR 271
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 87 AAQYSAAPHHTAPRPNKPTAKRISTPRA 4
AA PHH APRP P A P A
Sbjct: 235 AAHPPPPPHHPAPRPPPPMAAAPRQPAA 262
>08_01_0343 -
3025577-3025810,3026428-3026505,3026630-3026748,
3027566-3027645,3028034-3028107,3028536-3028620,
3028704-3028789,3028968-3029038,3029126-3029207,
3029490-3029531,3029552-3029584,3029699-3029794,
3030163-3030414,3030970-3031149,3032079-3032119,
3032341-3032470,3032504-3032606,3032686-3032773,
3033151-3033304,3033688-3033739,3033815-3033894,
3034478-3034789,3034886-3034955,3035033-3035100,
3035405-3035678,3036408-3036580,3037036-3037128,
3037228-3037443
Length = 1121
Score = 27.1 bits (57), Expect = 9.2
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 83 AAETRRVPATRRRVSISSPNPPGSLSFPLHDSPLPTGVAAAPRH 214
A E R T R S+ SP+PP L+ L L + AAAP H
Sbjct: 17 AREWRTALLTLRDESVVSPSPPALLAL-LRRVLLLSAAAAAPPH 59
>06_03_1310 + 29238644-29240260
Length = 538
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -2
Query: 123 TRRRVAGTRLVSAAQYSAAPHHTAPRPNKPTAKRISTP 10
T RR G R A S PHH PR PT S+P
Sbjct: 368 TTRRPGG-RTPLAPHRSPLPHHMPPRRTPPTPPPPSSP 404
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,219,256
Number of Sequences: 37544
Number of extensions: 188849
Number of successful extensions: 820
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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