Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C03
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50858-5|CAA90722.1|  534|Caenorhabditis elegans Hypothetical pr...    31   0.38 
U13074-1|AAA96982.1|  534|Caenorhabditis elegans steroid hormone...    31   0.38 
AF043693-11|AAB97541.2|  213|Caenorhabditis elegans Hypothetical...    29   2.7  

>Z50858-5|CAA90722.1|  534|Caenorhabditis elegans Hypothetical
           protein F44A6.2 protein.
          Length = 534

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 81  QYSAAPHHTAPRPNKPTAKRISTP 10
           QY+ AP H +P+P +PT  +  TP
Sbjct: 508 QYTPAPEHQSPQPQQPTPNQQQTP 531


>U13074-1|AAA96982.1|  534|Caenorhabditis elegans steroid hormone
           receptor familymember CNR14 protein.
          Length = 534

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 81  QYSAAPHHTAPRPNKPTAKRISTP 10
           QY+ AP H +P+P +PT  +  TP
Sbjct: 508 QYTPAPEHQSPQPQQPTPNQQQTP 531


>AF043693-11|AAB97541.2|  213|Caenorhabditis elegans Hypothetical
           protein C34B2.9 protein.
          Length = 213

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 83  AAETRRVPATRRRVSISSPNPPGSLSFPLHDS 178
           +  T    A+ RR  ISS NPP S   PLH S
Sbjct: 96  STSTASSSASSRRPIISSNNPPSSSPVPLHVS 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,003,840
Number of Sequences: 27780
Number of extensions: 139192
Number of successful extensions: 431
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)