Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C01
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    25   5.0  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    25   5.0  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    24   8.8  
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    24   8.8  

>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 102 EKSDIQGASTDNSRALQPTEDENTK 176
           +KS +QG    ++  LQP   EN K
Sbjct: 115 QKSRLQGLYRSDANGLQPLNSENVK 139


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 361 RLALWTEYFPCYISSLLLVNPSL 293
           +L +W EYF  Y ++L L+  SL
Sbjct: 190 KLRMWKEYFLLYGANLSLIRVSL 212


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 234 VAPMQLTCRQLLSQSTPNNFSYF 166
           V  +Q TC  LLSQS+  ++ +F
Sbjct: 69  VVSLQFTCAYLLSQSSLLSWKFF 91


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 235 LANASGXPNPKWVPIQXLSTAMG*REA-ERKYNTESTLS 348
           L+ A G PNP   PI  LS +     + E+  N ++T+S
Sbjct: 39  LSFAGGEPNPSKFPIHKLSVSFPEVNSWEKDTNKDATVS 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,660
Number of Sequences: 5004
Number of extensions: 29185
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)