Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_C01
(371 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465... 28 2.7
10_08_0736 + 20205934-20206551,20207258-20207426,20207562-202076... 27 6.2
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 27 6.2
03_01_0183 - 1474202-1474276,1474511-1474627,1474791-1474847,147... 27 6.2
02_04_0485 + 23338980-23339187,23339277-23339305,23339962-233400... 27 6.2
02_04_0482 + 23291986-23292181,23292289-23292317,23293500-232936... 27 6.2
01_06_1646 - 38887178-38887271,38888230-38888270,38888744-388888... 27 6.2
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 26 8.2
>02_01_0622 -
4658133-4658150,4658269-4658337,4658436-4658462,
4658808-4658873,4658954-4659076,4659562-4659629,
4659703-4659766,4659994-4660135,4660218-4660306,
4660574-4660637,4660870-4661021,4661124-4661261,
4661742-4661867,4661971-4662183,4662343-4662426,
4662583-4662742,4662993-4663126,4664047-4664136,
4664313-4664471,4665528-4665611,4666170-4666289,
4666338-4666391,4666899-4666945,4667556-4667598,
4667730-4668586,4668845-4668899
Length = 1081
Score = 27.9 bits (59), Expect = 2.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 371 RCTPPCTVDRVLSVLYFLSASRQPIAV 291
RC PPC +L +F SAS++ + V
Sbjct: 5 RCVPPCLGSNILDPGHFSSASQRAVPV 31
>10_08_0736 +
20205934-20206551,20207258-20207426,20207562-20207692,
20208100-20208144,20208145-20208939,20209081-20209128,
20209504-20209620,20210087-20210161
Length = 665
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 187 CALRQKLTTG*LHGCNLANASGXPNPKWV 273
CAL+Q L G + GC L A G P+W+
Sbjct: 278 CALKQLLIDGTIAGCALDGAEG---PQWM 303
>06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 230 ATLQMHPXYLTQNGFPSXSC 289
A LQ+HP L Q G P SC
Sbjct: 1149 AILQVHPSALKQGGVPLVSC 1168
>03_01_0183 -
1474202-1474276,1474511-1474627,1474791-1474847,
1475149-1475196,1475313-1476101,1476516-1476646,
1476769-1476937,1477954-1478541
Length = 657
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 187 CALRQKLTTG*LHGCNLANASGXPNPKWV 273
CAL+Q L G + GC L A G P+W+
Sbjct: 268 CALKQLLIDGTIAGCALDGAEG---PQWM 293
>02_04_0485 + 23338980-23339187,23339277-23339305,23339962-23340064,
23340311-23340482,23340880-23340940,23341257-23341389,
23341938-23342208,23342595-23342734,23342912-23342998,
23343078-23343586,23343671-23344488,23344522-23344720,
23345552-23345696,23345728-23345782,23347652-23347778,
23347867-23347936,23348448-23348553,23348636-23348747,
23349243-23349365,23349468-23349627,23349751-23349827,
23349925-23349977,23350151-23350205,23350500-23351174
Length = 1495
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/34 (23%), Positives = 20/34 (58%)
Frame = +3
Query: 90 IMTSEKSDIQGASTDNSRALQPTEDENTKNCWVC 191
++ S++ + +T + A++ E+ + K CW+C
Sbjct: 1410 VIESDEVALDATATGHQVAVRQQEEFDPKKCWIC 1443
>02_04_0482 + 23291986-23292181,23292289-23292317,23293500-23293602,
23293855-23293979,23294788-23294920,23295468-23295739,
23295806-23295873,23296126-23296265,23296443-23296529,
23296610-23297118,23297203-23298020,23298054-23298252,
23299084-23299228,23299260-23299314,23301184-23301310,
23301399-23301468,23301980-23302085,23302168-23302279,
23302775-23302897,23303000-23303159,23303283-23303359,
23303457-23303509,23303683-23303737,23304032-23304706
Length = 1478
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/34 (23%), Positives = 20/34 (58%)
Frame = +3
Query: 90 IMTSEKSDIQGASTDNSRALQPTEDENTKNCWVC 191
++ S++ + +T + A++ E+ + K CW+C
Sbjct: 1393 VIESDEVALDATATGHQVAVRQQEEFDPKKCWIC 1426
>01_06_1646 -
38887178-38887271,38888230-38888270,38888744-38888827,
38888933-38889080,38889232-38889299,38889563-38889634,
38890479-38890673
Length = 233
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 272 FPSXSCLQRWVDEKQRGNITRKVLCPQ 352
F C+QRW D+K GNIT ++ C Q
Sbjct: 66 FAHRKCIQRWCDKK--GNITCEI-CNQ 89
>06_03_0999 -
26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/39 (25%), Positives = 18/39 (46%)
Frame = +3
Query: 114 IQGASTDNSRALQPTEDENTKNCWVCFATEADDRLAAWV 230
+QG+ +N +A+Q + N C+ D L W+
Sbjct: 583 VQGSGPENMQAIQVDTAATSLNSSYCYVLHDGDTLFTWI 621
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,146,417
Number of Sequences: 37544
Number of extensions: 189590
Number of successful extensions: 403
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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