Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_C01
         (371 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.66 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.66 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   8.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   8.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   8.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   8.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 0.66
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 162 PRWVVEPLNYLY*RPEYLTFH 100
           PRW+VEP +    R +++  H
Sbjct: 710 PRWIVEPTDVSVERNKHVALH 730


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 0.66
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 162 PRWVVEPLNYLY*RPEYLTFH 100
           PRW+VEP +    R +++  H
Sbjct: 706 PRWIVEPTDVSVERNKHVALH 726


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -3

Query: 333 RVIFPLCF 310
           R++FP+CF
Sbjct: 409 RIVFPVCF 416


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -3

Query: 333 RVIFPLCF 310
           R++FP+CF
Sbjct: 409 RIVFPVCF 416


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 311 SRQPIAVDKXWMGTHFG 261
           SR    +DK  MG+H G
Sbjct: 369 SRPQYQIDKRSMGSHHG 385


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -3

Query: 333 RVIFPLCF 310
           R++FP+CF
Sbjct: 347 RIVFPVCF 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,901
Number of Sequences: 438
Number of extensions: 1833
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)