Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_B24
(462 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces... 27 1.1
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 27 1.8
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 26 2.4
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 4.3
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 25 7.4
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide... 25 7.4
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 25 7.4
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 25 7.4
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc... 24 9.8
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 9.8
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 24 9.8
>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.5 bits (58), Expect = 1.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 3 SARGHFDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLK 122
S G FD+ + YER P G + YE+ +++D K
Sbjct: 251 SMHGQFDETKLYERAPPETAGIGKPENYEELDKEYVDAAK 290
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 26.6 bits (56), Expect = 1.8
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 209 ENVFNSTGAEWKIQKRLFTQNNIGQTKFYFECIHKVDNVLFIFV-ECITSSF 57
E +F++ I ++F +++I F+ C H V N LF+F IT+SF
Sbjct: 17 EVLFSAISFGISIYIKVFGRSSI--VTFFLLCFHLVPNALFLFPWTIITTSF 66
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 26.2 bits (55), Expect = 2.4
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -3
Query: 181 NGRSRSDFSLKTILDKPSFILSV 113
N R++++ SLK + +PSF+L+V
Sbjct: 16 NTRTKAELSLKQLEKEPSFVLAV 38
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 25.4 bits (53), Expect = 4.3
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = -3
Query: 199 LTAPAR-NGRSRSDFSLKTILDKPSFILSVSIKSITFFSYLS-------NVSHPVLTKG 47
+T P R NG S F+L T PS+ LS + F Y+S + SHP ++ G
Sbjct: 1 MTGPFRYNGGSVRSFALTTNFSFPSYDLSFNETEHGVFCYVSRPLTKERSCSHPYISLG 59
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 24.6 bits (51), Expect = 7.4
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 342 GGNLAHVVGFDESSVLMLGDKK--RTKESEALRATLELP 452
GG L V G S +LGD+K R K S A+ + +P
Sbjct: 168 GGQLEQVKGITYSLDALLGDEKLARLKRSHAIPSPDHIP 206
>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 24.6 bits (51), Expect = 7.4
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -2
Query: 158 FTQNNIGQTKFYFECIHKVDNVLFIFVECITSSFD 54
FT+ G+ + +EC+ D++LF+ + I S++D
Sbjct: 12 FTKIATGKVRDLYECVEFPDDLLFVATDRI-SAYD 45
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 24.6 bits (51), Expect = 7.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 338 LELRCHRHY*HRHTQIFQQRFEYNTANKF 252
L++R H HT I+ F+ N+ NKF
Sbjct: 6 LQIRWHYDANDDHTPIYSVDFQKNSLNKF 34
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 24.6 bits (51), Expect = 7.4
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 202 CLTAPARNGRSRSDFSLKTILDKPSFI--LSVSIKSI 98
CLT P +SDFSL+ D ++V+IKSI
Sbjct: 377 CLTVPTPPSYVKSDFSLEDGTDAALICEGINVNIKSI 413
>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 24.2 bits (50), Expect = 9.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 402 YHPASGQMIHRIRRHAQGFHR 340
+HPA + R+RR+ GF R
Sbjct: 236 HHPADVEEARRLRRYNMGFSR 256
>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 330
Score = 24.2 bits (50), Expect = 9.8
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 21 DDKERYERMPFVKTGCDTFDKY-EKNVIDFMD 113
D+K R +P + GC + KY + + +DF D
Sbjct: 34 DEKNRINAVPLLLLGC-LYGKYKDDDFVDFFD 64
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 24.2 bits (50), Expect = 9.8
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = -3
Query: 460 ESDGSSNVALSASDSLVLFLSPSIRTDDSSNPTTCARFPPHLSSG 326
E+D S V L S SL + +I SN T FPP SSG
Sbjct: 86 ENDQSLLVTLKVSTSLGQKIE-NILHPKLSNDTNSTAFPPAKSSG 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,353
Number of Sequences: 5004
Number of extensions: 33630
Number of successful extensions: 104
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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