Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B24
         (462 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447...    28   3.2  
04_03_0618 - 18071612-18072795,18073007-18073072,18074101-180741...    28   3.2  
07_03_0874 - 22202699-22203070,22204239-22204874                       28   4.2  
11_04_0284 + 15770208-15770409,15770915-15771146,15771550-157717...    27   9.7  
04_03_0623 - 18109311-18109853,18109900-18110495,18111292-181114...    27   9.7  
04_01_0367 + 4834602-4835489,4836117-4836644                           27   9.7  

>11_08_0023 +
           27741775-27742475,27744163-27744413,27744557-27744715,
           27744976-27745409,27745537-27746076
          Length = 694

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 170 QKRLFTQNNIGQT-KFYFECIHKVDNVLFIFVECITSSFDKRHTLVALFVVEMSSCR 3
           +++++ Q+ +  T   Y  C+  +D +  + V C+ +  DKR T+ A  V E+   R
Sbjct: 631 RRKMYDQDMLSSTDSLYPYCMECLDRMAAVAVRCLKNKVDKRPTM-AEVVEELKQLR 686


>04_03_0618 -
           18071612-18072795,18073007-18073072,18074101-18074175,
           18074234-18074963
          Length = 684

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = -3

Query: 172 SRSDFSLKTILDKPSFILSVSIKSITFFSYLSNVSHPVLTKGIRS 38
           S++D S++T+       L V+ +S   FSYL ++ HP+L   ++S
Sbjct: 452 SQNDPSIRTL----EIRLKVAAESAEAFSYLHSLDHPILHGDVKS 492


>07_03_0874 - 22202699-22203070,22204239-22204874
          Length = 335

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 433 LSASDSLVLFLSPSIRTDDSSNPTTCARFPPHLSSG 326
           ++A+  L L L+PS  TD  S P + A+ P + SSG
Sbjct: 5   VAAALLLALLLAPSAATDVPSYPLSQAQSPANTSSG 40


>11_04_0284 +
           15770208-15770409,15770915-15771146,15771550-15771743,
           15771858-15771991,15772204-15772435,15772487-15772682,
           15774964-15775002,15775969-15775987,15776131-15776274
          Length = 463

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 330 ELKCGGNLAHVVGFDESSVLMLG 398
           +L C GN+AHVV     S  MLG
Sbjct: 365 QLACAGNVAHVVVMPHVSFEMLG 387


>04_03_0623 -
           18109311-18109853,18109900-18110495,18111292-18111493,
           18111616-18111814,18112091-18112191
          Length = 546

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -3

Query: 172 SRSDFSLKTILDKPSFILSVSIKSITFFSYLSNVSHPVL 56
           S++D S++T+       L V+ +S   FSYL ++ HP+L
Sbjct: 329 SQNDPSIRTL----EIRLKVAAESAEAFSYLHSLDHPIL 363


>04_01_0367 + 4834602-4835489,4836117-4836644
          Length = 471

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = -2

Query: 209 ENVFNSTGAEWKIQKRLFTQNNIG---QTKFYFECIHKVDNVL-FIFVECITSSFDKRH 45
           +N   STG +WK  +R+     +    + +   + + + D+++ +I+  C   + D RH
Sbjct: 113 KNTVGSTGDQWKKMRRMLASEILSSAMERRMLGQRVEEADHLVNYIYRNCNNGTVDIRH 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,522,482
Number of Sequences: 37544
Number of extensions: 203884
Number of successful extensions: 559
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)