Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B24
         (462 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82096-7|CAB05033.2|  332|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U64851-3|AAC47988.1|  160|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormo...    27   8.6  

>Z82096-7|CAB05033.2|  332|Caenorhabditis elegans Hypothetical
           protein ZK909.5 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 12  GHFDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIK 128
           GHF D   Y ++   K  CD FD   K++ D  + ++IK
Sbjct: 122 GHFQDALHYPKVDDFKIECDEFDL--KSICDDFEGMQIK 158


>Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical
           protein C29E6.4 protein.
          Length = 906

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 220 DTVKRTCLTAPARNGRSRSDFSLKTILDKPSFILSVSIKSI 98
           D  +  C+   AR    R +F +    D PSF +S+ +KSI
Sbjct: 166 DYYENNCVHPTARCPNGRIEFVVTRKADVPSFGISLGVKSI 206


>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
           protein R10E11.1b protein.
          Length = 2056

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 460 ESDGSSNV-ALSASDSLVLFLSPSIRTDDSSNPTTCA 353
           +SD  S + ALSA +SL  F + S  TD  +NP+T A
Sbjct: 12  DSDYDSGLDALSALESLEAFPTSSKDTDVDNNPSTSA 48


>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
           protein R10E11.1a protein.
          Length = 2045

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 460 ESDGSSNV-ALSASDSLVLFLSPSIRTDDSSNPTTCA 353
           +SD  S + ALSA +SL  F + S  TD  +NP+T A
Sbjct: 12  DSDYDSGLDALSALESLEAFPTSSKDTDVDNNPSTSA 48


>U64851-3|AAC47988.1|  160|Caenorhabditis elegans Hypothetical
           protein F28A12.3 protein.
          Length = 160

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 176 KIQKRLFTQNNIGQTKFYFEC 114
           K+ K++FT+ NI   K+Y +C
Sbjct: 36  KLTKKMFTELNISPDKYYGDC 56


>AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 266 protein.
          Length = 920

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +3

Query: 27  KERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIKLGLSNIVLSEKSLLDLPF 182
           +E + + P +K   + F   +  + DFM +++ +  LS I    K + ++PF
Sbjct: 606 EETWSKYPELKKSLEKFRSNKMKLDDFMISVRTEKNLSQIGSIYKEVSNIPF 657


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,018,276
Number of Sequences: 27780
Number of extensions: 186951
Number of successful extensions: 557
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)