Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B23
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    26   2.5  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    25   5.7  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   7.5  

>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 377 YNDLECCVNVLVKIYFILILRGYIAFKFLDVDMNYTKLLFSISDHTMT 234
           Y   +C ++  +K+  IL+ + Y   K +D   NY   L  ISD  ++
Sbjct: 221 YLHSKCLIHRDLKLENILLTQPYNVIKTIDNWKNYPNALIQISDFELS 268


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 266 IWYNSYLHQEI*MQYN 313
           +WY+ Y H EI  QYN
Sbjct: 804 VWYDWYNHTEIVRQYN 819


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 329  ILILRGYIAFKFLDVDMNYTKLLFSISDHTM 237
            ILIL+G+ +    ++ MN+  LL    D+ +
Sbjct: 1712 ILILKGFRSTNSFEITMNFFLLLMDFKDNDL 1742


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,674,073
Number of Sequences: 5004
Number of extensions: 31399
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)