Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B23
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0373 + 20017511-20017582,20019274-20019379,20020173-200202...    28   3.2  
11_01_0239 - 1842576-1842741,1843264-1843379,1843667-1843738,184...    27   7.4  

>06_03_0373 +
           20017511-20017582,20019274-20019379,20020173-20020228,
           20021025-20021119,20022019-20022117,20022886-20022991,
           20023113-20023175
          Length = 198

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 338 IYFILILRGYIAFKFLDVDMNYTKLLFS 255
           ++F+L +  YI   FL+V ++Y +L FS
Sbjct: 116 VHFVLKISQYILLSFLEVTVSYGQLAFS 143


>11_01_0239 -
           1842576-1842741,1843264-1843379,1843667-1843738,
           1844057-1844143,1844479-1844582,1845250-1845307,
           1845582-1845630,1846252-1846577,1846645-1846785
          Length = 372

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 314 GYIAFKFLDVDMNYTKLLFSISDHTMTRLTVYL 216
           G +AFK L + +N   ++ +I DH  T L  YL
Sbjct: 228 GLVAFKDLFMSINNIVVISTIFDHKWTHLLKYL 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,419,541
Number of Sequences: 37544
Number of extensions: 130695
Number of successful extensions: 142
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)