Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B23
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35601-4|CAO82063.1|  145|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z35601-3|CAO82062.1|  185|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z35600-6|CAO82037.1|  145|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z35600-5|CAO82036.1|  185|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z35601-4|CAO82063.1|  145|Caenorhabditis elegans Hypothetical
           protein R10E9.3b protein.
          Length = 145

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 353 NVLVKIYFILILRGYIAFKFLDVDMNYTKLLFSISDHTMTRLTVY 219
           +V   IY +L++   I    LD+   YT L F I++  +  +T+Y
Sbjct: 49  SVTFAIYLVLLIVSVI---LLDISFFYTILAFGIAECFLIAITIY 90


>Z35601-3|CAO82062.1|  185|Caenorhabditis elegans Hypothetical
           protein R10E9.3a protein.
          Length = 185

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 353 NVLVKIYFILILRGYIAFKFLDVDMNYTKLLFSISDHTMTRLTVY 219
           +V   IY +L++   I    LD+   YT L F I++  +  +T+Y
Sbjct: 49  SVTFAIYLVLLIVSVI---LLDISFFYTILAFGIAECFLIAITIY 90


>Z35600-6|CAO82037.1|  145|Caenorhabditis elegans Hypothetical
           protein R10E9.3b protein.
          Length = 145

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 353 NVLVKIYFILILRGYIAFKFLDVDMNYTKLLFSISDHTMTRLTVY 219
           +V   IY +L++   I    LD+   YT L F I++  +  +T+Y
Sbjct: 49  SVTFAIYLVLLIVSVI---LLDISFFYTILAFGIAECFLIAITIY 90


>Z35600-5|CAO82036.1|  185|Caenorhabditis elegans Hypothetical
           protein R10E9.3a protein.
          Length = 185

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 353 NVLVKIYFILILRGYIAFKFLDVDMNYTKLLFSISDHTMTRLTVY 219
           +V   IY +L++   I    LD+   YT L F I++  +  +T+Y
Sbjct: 49  SVTFAIYLVLLIVSVI---LLDISFFYTILAFGIAECFLIAITIY 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,797,196
Number of Sequences: 27780
Number of extensions: 161610
Number of successful extensions: 313
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)